About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNA-Seq data from monocytes-derived macrophages in vitro

Transcriptome characterization with scRNA-Seq of macrophages derived from HLA-DRB1 negative and HLA-DRB1 positive monocytes cultivated in vitro

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DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

Access to the DoCTIS project data

DoCTIS is the acronym for the EU-funded project entitled “Decision on Combinatorial Therapies in Immune-Mediated diseases using Systems approaches” (grant agreement 848028). DoCTIS is a multicentric project involving diverse basic, applied and clinical international research centres, and is aimed at improving treatment efficacy in six Immune-Mediated Inflammatory Diseases (IMIDs). These IMIDs encompass Crohn’s disease, ulcerative colitis, rheumatoid arthritis, systemic lupus erythematosus, psoriasis and psoriatic arthritis. Through the generation of high volumes of data using high-throughput technologies on samples from well-characterized IMID patients, and the use of advanced systems biology analytical approaches, we aim to identify therapeutic combinations that are much more efficacious and safer than the current single-drug approaches. Access to the sequence data produced by the DoCTIS Consortium is controlled by the DoCTIS Data Access Committee (DAC). Access to data will be granted to qualified investigators for appropriate use. Please email sara.marsal@vhir.org request data access to request data access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001953 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000920580 fastq.gz 3.9 GB
EGAF50000920581 fastq.gz 1.1 GB
EGAF50000921269 fastq.gz 3.3 GB
EGAF50000921270 fastq.gz 3.0 GB
EGAF50000921271 fastq.gz 4.3 GB
EGAF50000921272 fastq.gz 882.6 MB
EGAF50000921273 fastq.gz 738.8 MB
EGAF50000921274 fastq.gz 2.5 GB
EGAF50000921275 fastq.gz 2.2 GB
EGAF50000921276 fastq.gz 5.4 GB
EGAF50000921277 fastq.gz 4.9 GB
EGAF50000921278 fastq.gz 913.2 MB
12 Files (33.0 GB)