About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNA-Seq RA validation dataset from DoCTIS

A validation cohort with 32 samples from RA donors were profiled with scRNA-Seq

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DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

Access to the DoCTIS project data

DoCTIS is the acronym for the EU-funded project entitled “Decision on Combinatorial Therapies in Immune-Mediated diseases using Systems approaches” (grant agreement 848028). DoCTIS is a multicentric project involving diverse basic, applied and clinical international research centres, and is aimed at improving treatment efficacy in six Immune-Mediated Inflammatory Diseases (IMIDs). These IMIDs encompass Crohn’s disease, ulcerative colitis, rheumatoid arthritis, systemic lupus erythematosus, psoriasis and psoriatic arthritis. Through the generation of high volumes of data using high-throughput technologies on samples from well-characterized IMID patients, and the use of advanced systems biology analytical approaches, we aim to identify therapeutic combinations that are much more efficacious and safer than the current single-drug approaches. Access to the sequence data produced by the DoCTIS Consortium is controlled by the DoCTIS Data Access Committee (DAC). Access to data will be granted to qualified investigators for appropriate use. Please email sara.marsal@vhir.org request data access to request data access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001960 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000922443 fastq.gz 2.2 GB
EGAF50000922444 fastq.gz 2.2 GB
EGAF50000922445 fastq.gz 6.5 GB
EGAF50000922446 fastq.gz 14.7 GB
EGAF50000922447 fastq.gz 14.5 GB
EGAF50000922448 fastq.gz 6.5 GB
EGAF50000922449 fastq.gz 6.9 GB
EGAF50000922450 fastq.gz 16.2 GB
EGAF50000922451 fastq.gz 1.6 GB
EGAF50000922452 fastq.gz 4.2 GB
EGAF50000922453 fastq.gz 1.9 GB
EGAF50000922454 fastq.gz 2.5 GB
EGAF50000922455 fastq.gz 6.7 GB
EGAF50000922456 fastq.gz 15.5 GB
EGAF50000922457 fastq.gz 6.6 GB
EGAF50000922458 fastq.gz 15.4 GB
EGAF50000922459 fastq.gz 5.7 GB
EGAF50000922460 fastq.gz 2.5 GB
EGAF50000922461 fastq.gz 5.8 GB
EGAF50000922462 fastq.gz 14.9 GB
EGAF50000922463 fastq.gz 6.3 GB
EGAF50000922464 fastq.gz 4.6 GB
EGAF50000922465 fastq.gz 2.0 GB
EGAF50000922466 fastq.gz 2.0 GB
EGAF50000922467 fastq.gz 4.6 GB
EGAF50000922468 fastq.gz 6.3 GB
EGAF50000922469 fastq.gz 1.9 GB
EGAF50000922470 fastq.gz 4.1 GB
EGAF50000922471 fastq.gz 1.9 GB
EGAF50000922472 fastq.gz 6.4 GB
EGAF50000922473 fastq.gz 14.4 GB
EGAF50000922474 fastq.gz 6.8 GB
EGAF50000922475 fastq.gz 16.0 GB
EGAF50000922476 fastq.gz 3.6 GB
EGAF50000922477 fastq.gz 1.6 GB
EGAF50000922478 fastq.gz 3.6 GB
EGAF50000922479 fastq.gz 2.2 GB
EGAF50000922480 fastq.gz 5.0 GB
EGAF50000922481 fastq.gz 2.2 GB
EGAF50000922482 fastq.gz 4.8 GB
EGAF50000922483 fastq.gz 7.8 GB
EGAF50000922484 fastq.gz 17.4 GB
EGAF50000922485 fastq.gz 7.8 GB
EGAF50000922486 fastq.gz 17.4 GB
EGAF50000922487 fastq.gz 5.0 GB
EGAF50000922488 fastq.gz 6.3 GB
EGAF50000922489 fastq.gz 14.0 GB
EGAF50000922490 fastq.gz 6.2 GB
EGAF50000922491 fastq.gz 13.9 GB
EGAF50000922492 fastq.gz 4.9 GB
EGAF50000922493 fastq.gz 14.8 GB
EGAF50000922494 fastq.gz 1.9 GB
EGAF50000922495 fastq.gz 4.2 GB
EGAF50000922496 fastq.gz 6.5 GB
EGAF50000922497 fastq.gz 14.8 GB
EGAF50000922498 fastq.gz 1.8 GB
EGAF50000922499 fastq.gz 4.0 GB
EGAF50000922500 fastq.gz 1.8 GB
EGAF50000922501 fastq.gz 15.8 GB
EGAF50000922502 fastq.gz 7.0 GB
EGAF50000922503 fastq.gz 7.0 GB
EGAF50000922504 fastq.gz 15.8 GB
EGAF50000922505 fastq.gz 4.1 GB
EGAF50000922506 fastq.gz 3.9 GB
EGAF50000922507 csv 71.0 kB
65 Files (457.3 GB)