About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA-seq for "A preinvasive regulatory T cell axis for lung cancer interception" paper

Bulk RNA sequencing data generated from primary resected non-small cell lung cancer (NSCLC) tumour tissue collected through the ASCENT study (Analysis of Screen-Detected Lung Cancers’ Genomic Traits; NCT04204499). The dataset comprises tumour RNA-seq from 89 patients with CT screen-detected NSCLC, predominantly early-stage disease, including lung adenocarcinoma and lung squamous cell carcinoma. The RNA-seq data were used to characterise tumour-immune transcriptional programmes and were analysed alongside matched peripheral blood immune profiling and clinical follow-up data.

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0008903 lung cancer

DUO:0000011
version: 2021-02-23

population origins or ancestry research only

This data use permission indicates that use of the data is limited to the study of population origins or ancestry.

DUO:0000012
version: 2021-02-23

research specific restrictions

This data use modifier indicates that use is limited to studies of a certain research type.

DUO:0000015
version: 2021-02-23

no general methods research

This data use modifier indicates that use does not allow methods development research (e.g., development of software or algorithms).

DUO:0000016
version: 2021-02-23

genetic studies only

This data use modifier indicates that use is limited to genetic studies only (i.e., studies that include genotype research alone or both genotype and phenotype research, but not phenotype research exclusively)

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000020
version: 2021-02-23

collaboration required

This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000022
version: 2021-02-23

geographical restriction

This data use modifier indicates that use is limited to within a specific geographic region.

DUO:0000024
version: 2021-02-23

publication moratorium

This data use modifier indicates that requestor agrees not to publish results of studies until a specific date.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000029
version: 2021-02-23

return to database or resource

This data use modifier indicates that the requestor must return derived/enriched data to the database/resource.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

DUO:0000043
version: 2021-02-23

clinical care use

This data use modifier indicates that use is allowed for clinical use and care.

DUO:0000044
version: 2021-02-23

population origins or ancestry research prohibited

This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.

ASCENT data availability

UCL allows access to published datasets upon written application and signature of a Data Access Agreement (DAA) being in place. Applications require approval by the ASCENT Data Access Committee (DAC), who assess whether the proposed work is allowed given participant consent, as well as the scientific purpose. Requestors will be provided with a data access form upon contact with the ASCENT DAC

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001969 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000924690 fastq.gz 5.4 GB
EGAF50000924691 fastq.gz 5.6 GB
EGAF50000924692 fastq.gz 4.1 GB
EGAF50000924693 fastq.gz 4.2 GB
EGAF50000924694 fastq.gz 4.1 GB
EGAF50000924695 fastq.gz 4.2 GB
EGAF50000924696 fastq.gz 4.6 GB
EGAF50000924697 fastq.gz 4.7 GB
EGAF50000924698 fastq.gz 4.2 GB
EGAF50000924699 fastq.gz 4.3 GB
EGAF50000924700 fastq.gz 4.5 GB
EGAF50000924701 fastq.gz 4.5 GB
EGAF50000924702 fastq.gz 4.4 GB
EGAF50000924703 fastq.gz 4.3 GB
EGAF50000924704 fastq.gz 6.0 GB
EGAF50000924705 fastq.gz 6.2 GB
EGAF50000924706 fastq.gz 4.1 GB
EGAF50000924707 fastq.gz 4.0 GB
EGAF50000924708 fastq.gz 4.6 GB
EGAF50000924709 fastq.gz 4.6 GB
EGAF50000924710 fastq.gz 4.6 GB
EGAF50000924711 fastq.gz 4.5 GB
EGAF50000924712 fastq.gz 4.4 GB
EGAF50000924713 fastq.gz 4.3 GB
EGAF50000924714 fastq.gz 4.4 GB
EGAF50000924715 fastq.gz 4.5 GB
EGAF50000924716 fastq.gz 3.6 GB
EGAF50000924717 fastq.gz 3.7 GB
EGAF50000924718 fastq.gz 4.7 GB
EGAF50000924719 fastq.gz 4.8 GB
EGAF50000924720 fastq.gz 3.8 GB
EGAF50000924721 fastq.gz 3.9 GB
EGAF50000924722 fastq.gz 4.8 GB
EGAF50000924723 fastq.gz 4.9 GB
EGAF50000924724 fastq.gz 3.5 GB
EGAF50000924725 fastq.gz 3.6 GB
EGAF50000924726 fastq.gz 5.1 GB
EGAF50000924727 fastq.gz 5.2 GB
EGAF50000924728 fastq.gz 3.8 GB
EGAF50000924729 fastq.gz 3.9 GB
EGAF50000924730 fastq.gz 4.3 GB
EGAF50000924731 fastq.gz 4.4 GB
EGAF50000924732 fastq.gz 4.3 GB
EGAF50000924733 fastq.gz 4.4 GB
EGAF50000924734 fastq.gz 3.9 GB
EGAF50000924735 fastq.gz 3.9 GB
EGAF50000924736 fastq.gz 3.7 GB
EGAF50000924737 fastq.gz 3.5 GB
EGAF50000924738 fastq.gz 4.5 GB
EGAF50000924739 fastq.gz 4.7 GB
EGAF50000924740 fastq.gz 4.7 GB
EGAF50000924741 fastq.gz 4.9 GB
EGAF50000924742 fastq.gz 4.2 GB
EGAF50000924743 fastq.gz 4.4 GB
EGAF50000924744 fastq.gz 4.4 GB
EGAF50000924745 fastq.gz 4.5 GB
EGAF50000924746 fastq.gz 4.0 GB
EGAF50000924747 fastq.gz 4.2 GB
EGAF50000924748 fastq.gz 4.9 GB
EGAF50000924749 fastq.gz 5.0 GB
EGAF50000924750 fastq.gz 4.1 GB
EGAF50000924751 fastq.gz 4.2 GB
EGAF50000924752 fastq.gz 3.4 GB
EGAF50000924753 fastq.gz 3.5 GB
EGAF50000924754 fastq.gz 4.2 GB
EGAF50000924755 fastq.gz 4.1 GB
EGAF50000924756 fastq.gz 4.4 GB
EGAF50000924757 fastq.gz 4.5 GB
EGAF50000924758 fastq.gz 4.0 GB
EGAF50000924759 fastq.gz 4.1 GB
EGAF50000924760 fastq.gz 3.7 GB
EGAF50000924761 fastq.gz 3.8 GB
EGAF50000924762 fastq.gz 3.1 GB
EGAF50000924763 fastq.gz 3.2 GB
EGAF50000924764 fastq.gz 4.2 GB
EGAF50000924765 fastq.gz 4.3 GB
EGAF50000924766 fastq.gz 4.3 GB
EGAF50000924767 fastq.gz 4.5 GB
EGAF50000924768 fastq.gz 4.3 GB
EGAF50000924769 fastq.gz 4.2 GB
EGAF50000924770 fastq.gz 4.5 GB
EGAF50000924771 fastq.gz 4.6 GB
EGAF50000924772 fastq.gz 5.6 GB
EGAF50000924773 fastq.gz 5.6 GB
EGAF50000924774 fastq.gz 5.4 GB
EGAF50000924775 fastq.gz 5.5 GB
EGAF50000924776 fastq.gz 4.7 GB
EGAF50000924777 fastq.gz 4.8 GB
EGAF50000924778 fastq.gz 4.9 GB
EGAF50000924779 fastq.gz 5.0 GB
EGAF50000924780 fastq.gz 5.8 GB
EGAF50000924781 fastq.gz 5.8 GB
EGAF50000924782 fastq.gz 5.2 GB
EGAF50000924783 fastq.gz 5.3 GB
EGAF50000924784 fastq.gz 5.7 GB
EGAF50000924785 fastq.gz 5.8 GB
EGAF50000924786 fastq.gz 5.3 GB
EGAF50000924787 fastq.gz 5.4 GB
EGAF50000924788 fastq.gz 5.3 GB
EGAF50000924789 fastq.gz 5.3 GB
EGAF50000924790 fastq.gz 5.0 GB
EGAF50000924791 fastq.gz 4.9 GB
EGAF50000924792 fastq.gz 5.0 GB
EGAF50000924793 fastq.gz 5.0 GB
EGAF50000924794 fastq.gz 5.4 GB
EGAF50000924795 fastq.gz 5.5 GB
EGAF50000924796 fastq.gz 5.3 GB
EGAF50000924797 fastq.gz 5.4 GB
EGAF50000924798 fastq.gz 4.1 GB
EGAF50000924799 fastq.gz 4.1 GB
EGAF50000924800 fastq.gz 5.3 GB
EGAF50000924801 fastq.gz 5.4 GB
EGAF50000924802 fastq.gz 4.5 GB
EGAF50000924803 fastq.gz 4.6 GB
EGAF50000924804 fastq.gz 5.0 GB
EGAF50000924805 fastq.gz 5.2 GB
EGAF50000924806 fastq.gz 5.6 GB
EGAF50000924807 fastq.gz 5.5 GB
EGAF50000924808 fastq.gz 5.2 GB
EGAF50000924809 fastq.gz 5.3 GB
EGAF50000924810 fastq.gz 6.4 GB
EGAF50000924811 fastq.gz 6.3 GB
EGAF50000924812 fastq.gz 4.5 GB
EGAF50000924813 fastq.gz 4.6 GB
EGAF50000924814 fastq.gz 4.3 GB
EGAF50000924815 fastq.gz 4.4 GB
EGAF50000924816 fastq.gz 5.2 GB
EGAF50000924817 fastq.gz 5.3 GB
EGAF50000924818 fastq.gz 4.6 GB
EGAF50000924819 fastq.gz 4.7 GB
EGAF50000924820 fastq.gz 5.5 GB
EGAF50000924821 fastq.gz 5.6 GB
EGAF50000924822 fastq.gz 5.2 GB
EGAF50000924823 fastq.gz 5.3 GB
EGAF50000924824 fastq.gz 4.3 GB
EGAF50000924825 fastq.gz 4.5 GB
EGAF50000924826 fastq.gz 5.8 GB
EGAF50000924827 fastq.gz 5.8 GB
EGAF50000924828 fastq.gz 4.9 GB
EGAF50000924829 fastq.gz 5.1 GB
EGAF50000924830 fastq.gz 7.4 GB
EGAF50000924831 fastq.gz 7.5 GB
EGAF50000924832 fastq.gz 4.5 GB
EGAF50000924833 fastq.gz 4.6 GB
EGAF50000924834 fastq.gz 5.2 GB
EGAF50000924835 fastq.gz 5.3 GB
EGAF50000924836 fastq.gz 5.5 GB
EGAF50000924837 fastq.gz 5.6 GB
EGAF50000924838 fastq.gz 6.2 GB
EGAF50000924839 fastq.gz 6.3 GB
EGAF50000924840 fastq.gz 5.4 GB
EGAF50000924841 fastq.gz 5.2 GB
EGAF50000924842 fastq.gz 5.7 GB
EGAF50000924843 fastq.gz 5.9 GB
EGAF50000924844 fastq.gz 5.8 GB
EGAF50000924845 fastq.gz 5.9 GB
EGAF50000924846 fastq.gz 5.2 GB
EGAF50000924847 fastq.gz 5.2 GB
EGAF50000924848 fastq.gz 6.1 GB
EGAF50000924849 fastq.gz 6.0 GB
EGAF50000924850 fastq.gz 6.2 GB
EGAF50000924851 fastq.gz 6.3 GB
EGAF50000924852 fastq.gz 4.9 GB
EGAF50000924853 fastq.gz 5.0 GB
EGAF50000924854 fastq.gz 4.8 GB
EGAF50000924855 fastq.gz 4.9 GB
EGAF50000924856 fastq.gz 4.5 GB
EGAF50000924857 fastq.gz 4.6 GB
EGAF50000924858 fastq.gz 5.6 GB
EGAF50000924859 fastq.gz 5.7 GB
EGAF50000924860 fastq.gz 4.7 GB
EGAF50000924861 fastq.gz 4.8 GB
EGAF50000924862 fastq.gz 5.3 GB
EGAF50000924863 fastq.gz 5.4 GB
EGAF50000924864 fastq.gz 5.0 GB
EGAF50000924865 fastq.gz 5.1 GB
EGAF50000924866 fastq.gz 5.8 GB
EGAF50000924867 fastq.gz 6.0 GB
178 Files (863.3 GB)