Aligned BAM files from targeted amplicon sequencing
This dataset contains aligned BAM files generated from targeted amplicon sequencing, using Oncomine Focus assay (Thermo Fisher Scientific). The dataset includes 120 samples from 60 patients of Thyroid cancer. Reads were aligned to the reference genome and are provided as BAM files for downstream analysis. No processed variant calls are included. We uploaded 60 BAM from DNA samples and the 60 BAM of the RNA samples of these patients
- 08/10/2026
- 120 samples
- DAC: EGAC50000001089
- Technology: Ion Torrent S5 XL
- Archive: European Genome-phenome Archive (EGA)
DUO:0000007 version: 2021-02-23
disease specific research
This data use permission indicates that use is allowed provided it is related to the specified disease.
ModifiersMONDO:0002108 thyroid cancer
DUO:0000018 version: 2021-02-23
not for profit, non commercial use only
This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
DUO:0000028 version: 2021-02-23
institution specific restriction
This data use modifier indicates that use is limited to use within an approved institution.
DUO:0000042 version: 2021-02-23
general research use
This data use permission indicates that use is allowed for general research use for any research purpose.
VHIR Data Access Policy
The following terms govern access to managed-access datasets held by the Vall d'Hebron Research Institute (VHIR). Data may only be used for the approved research project and for the purposes authorized by the VHIR Data Access Committee (DAC). Users must maintain the confidentiality of the data and must not attempt to identify or re-identify research participants. Data must not be linked with other datasets in a manner that could enable participant identification. Access is limited to the authorized personnel named in the approved application. Any external collaborator must submit a separate access request unless otherwise authorized by the DAC. Users are responsible for implementing appropriate technical and organizational security measures to protect the data. Publications arising from the use of the data must appropriately acknowledge the data producers and comply with any publication policy, including applicable publication moratoria. Users shall not claim intellectual property rights over the original data or restrict future access to them. Intellectual property on downstream discoveries may be sought provided it does not hinder further research. Data must be destroyed or securely archived when the approved project ends, in accordance with applicable legal or institutional requirements. Users must promptly notify VHIR of: changes in authorized personnel; substantial changes to the approved research project; any actual or suspected data security incident or breach. VHIR reserves the right to audit compliance with these conditions and to terminate access if the terms are breached. The User Institution is responsible for ensuring that all authorized personnel comply with this policy. This policy is governed by the laws of Spain.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001977 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF50000929170 | bam | 16.1 MB |
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| EGAF50000929171 | bam | 53.4 MB |
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| EGAF50000929172 | bam | 172.5 MB |
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| EGAF50000929173 | bam | 1.2 GB |
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| EGAF50000929174 | bam | 131.1 MB |
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| EGAF50000929175 | bam | 7.3 MB |
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| EGAF50000929176 | bam | 228.6 MB |
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| EGAF50000929177 | bam | 145.2 MB |
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| EGAF50000929178 | bam | 623.4 MB |
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| EGAF50000929179 | bam | 57.0 MB |
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| EGAF50000929180 | bam | 20.7 MB |
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| EGAF50000929181 | bam | 519.0 MB |
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| EGAF50000929182 | bam | 131.6 MB |
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| EGAF50000929183 | bam | 528.1 MB |
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| EGAF50000929184 | bam | 24.7 MB |
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| EGAF50000929185 | bam | 72.4 MB |
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| EGAF50000929186 | bam | 1.1 GB |
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| EGAF50000929187 | bam | 745.3 MB |
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| EGAF50000929188 | bam | 17.3 MB |
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| EGAF50000929189 | bam | 10.5 MB |
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| EGAF50000929190 | bam | 223.4 MB |
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| EGAF50000929191 | bam | 30.7 MB |
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| EGAF50000929192 | bam | 237.8 MB |
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| EGAF50000929193 | bam | 38.2 MB |
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| EGAF50000929194 | bam | 253.9 MB |
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| EGAF50000929195 | bam | 292.3 MB |
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| EGAF50000929196 | bam | 41.0 MB |
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| EGAF50000929197 | bam | 265.0 MB |
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| EGAF50000929198 | bam | 451.0 MB |
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| EGAF50000929199 | bam | 543.1 MB |
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| EGAF50000929200 | bam | 75.1 MB |
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| EGAF50000929201 | bam | 124.1 MB |
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| EGAF50000929202 | bam | 346.0 MB |
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| EGAF50000929203 | bam | 624.5 MB |
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| EGAF50000929204 | bam | 532.6 MB |
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| EGAF50000929205 | bam | 246.4 MB |
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| EGAF50000929206 | bam | 34.3 MB |
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| EGAF50000929207 | bam | 31.4 MB |
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| EGAF50000929208 | bam | 24.2 MB |
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| EGAF50000929209 | bam | 249.7 MB |
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| EGAF50000929210 | bam | 311.4 MB |
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| EGAF50000929211 | bam | 251.1 MB |
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| EGAF50000929212 | bam | 256.9 MB |
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| EGAF50000929213 | bam | 20.2 MB |
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| EGAF50000929214 | bam | 52.8 MB |
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| EGAF50000929215 | bam | 53.9 MB |
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| EGAF50000929216 | bam | 253.2 MB |
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| EGAF50000929217 | bam | 293.6 MB |
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| EGAF50000929218 | bam | 19.7 MB |
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| EGAF50000929219 | bam | 28.1 MB |
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| EGAF50000929220 | bam | 653.3 MB |
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| EGAF50000929221 | bam | 171.4 MB |
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| EGAF50000929222 | bam | 101.1 MB |
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| EGAF50000929223 | bam | 273.9 MB |
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| EGAF50000929224 | bam | 285.8 MB |
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| EGAF50000929225 | bam | 269.2 MB |
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| EGAF50000929226 | bam | 26.8 MB |
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| EGAF50000929227 | bam | 35.0 MB |
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| EGAF50000929228 | bam | 33.1 MB |
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| EGAF50000929229 | bam | 40.9 MB |
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| EGAF50000929230 | bam | 44.2 MB |
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| EGAF50000929231 | bam | 16.9 MB |
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| EGAF50000929232 | bam | 23.4 MB |
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| EGAF50000929233 | bam | 170.5 MB |
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| EGAF50000929234 | bam | 71.9 MB |
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| EGAF50000929235 | bam | 199.3 MB |
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| EGAF50000929236 | bam | 121.1 MB |
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| EGAF50000929237 | bam | 4.0 GB |
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| EGAF50000929238 | bam | 739.9 MB |
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| EGAF50000929239 | bam | 463.9 MB |
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| EGAF50000929240 | bam | 582.0 MB |
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| EGAF50000929241 | bam | 637.8 MB |
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| EGAF50000929242 | bam | 669.2 MB |
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| EGAF50000929243 | bam | 18.9 MB |
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| EGAF50000929244 | bam | 56.0 MB |
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| EGAF50000929245 | bam | 38.9 MB |
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| EGAF50000929246 | bam | 476.7 MB |
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| EGAF50000929247 | bam | 36.6 MB |
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| EGAF50000929248 | bam | 47.2 MB |
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| EGAF50000929249 | bam | 315.4 MB |
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| EGAF50000929250 | bam | 539.1 MB |
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| EGAF50000929251 | bam | 214.4 MB |
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| EGAF50000929252 | bam | 12.3 MB |
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| EGAF50000929253 | bam | 20.6 MB |
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| EGAF50000929254 | bam | 18.6 MB |
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| EGAF50000929255 | bam | 54.0 MB |
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| EGAF50000929256 | bam | 142.6 MB |
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| EGAF50000929257 | bam | 14.6 MB |
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| EGAF50000929258 | bam | 147.5 MB |
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| EGAF50000929259 | bam | 25.2 MB |
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| EGAF50000929260 | bam | 509.9 MB |
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| EGAF50000929261 | bam | 112.2 MB |
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| EGAF50000929262 | bam | 5.7 GB |
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| EGAF50000929263 | bam | 298.4 MB |
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| EGAF50000929264 | bam | 417.7 MB |
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| EGAF50000929265 | bam | 269.8 MB |
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| EGAF50000929266 | bam | 258.4 MB |
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| EGAF50000929267 | bam | 265.6 MB |
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| EGAF50000929268 | bam | 144.4 MB |
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| EGAF50000929269 | bam | 579.1 MB |
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| EGAF50000929270 | bam | 286.2 MB |
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| EGAF50000929271 | bam | 61.7 MB |
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| EGAF50000929272 | bam | 67.8 MB |
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| EGAF50000929273 | bam | 27.7 MB |
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| EGAF50000929274 | bam | 24.9 MB |
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| EGAF50000929275 | bam | 512.3 MB |
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| EGAF50000929276 | bam | 500.6 MB |
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| EGAF50000929277 | bam | 20.6 MB |
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| EGAF50000929278 | bam | 73.7 MB |
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| EGAF50000929279 | bam | 274.9 MB |
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| EGAF50000929280 | bam | 267.4 MB |
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| EGAF50000929281 | bam | 307.0 MB |
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| EGAF50000929282 | bam | 314.8 MB |
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| EGAF50000929283 | bam | 14.5 MB |
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| EGAF50000929284 | bam | 501.1 MB |
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| EGAF50000929285 | bam | 497.1 MB |
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| EGAF50000929286 | bam | 323.4 MB |
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| EGAF50000929287 | bam | 11.1 MB |
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| EGAF50000929288 | bam | 162.8 MB |
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| EGAF50000929289 | bam | 153.4 MB |
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| 120 Files (36.7 GB) | ||||
