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Aligned BAM files from targeted amplicon sequencing

This dataset contains aligned BAM files generated from targeted amplicon sequencing, using Oncomine Focus assay (Thermo Fisher Scientific). The dataset includes 120 samples from 60 patients of Thyroid cancer. Reads were aligned to the reference genome and are provided as BAM files for downstream analysis. No processed variant calls are included. We uploaded 60 BAM from DNA samples and the 60 BAM of the RNA samples of these patients

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DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0002108 thyroid cancer

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

VHIR Data Access Policy

The following terms govern access to managed-access datasets held by the Vall d'Hebron Research Institute (VHIR). Data may only be used for the approved research project and for the purposes authorized by the VHIR Data Access Committee (DAC). Users must maintain the confidentiality of the data and must not attempt to identify or re-identify research participants. Data must not be linked with other datasets in a manner that could enable participant identification. Access is limited to the authorized personnel named in the approved application. Any external collaborator must submit a separate access request unless otherwise authorized by the DAC. Users are responsible for implementing appropriate technical and organizational security measures to protect the data. Publications arising from the use of the data must appropriately acknowledge the data producers and comply with any publication policy, including applicable publication moratoria. Users shall not claim intellectual property rights over the original data or restrict future access to them. Intellectual property on downstream discoveries may be sought provided it does not hinder further research. Data must be destroyed or securely archived when the approved project ends, in accordance with applicable legal or institutional requirements. Users must promptly notify VHIR of: changes in authorized personnel; substantial changes to the approved research project; any actual or suspected data security incident or breach. VHIR reserves the right to audit compliance with these conditions and to terminate access if the terms are breached. The User Institution is responsible for ensuring that all authorized personnel comply with this policy. This policy is governed by the laws of Spain.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001977 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000929170 bam 16.1 MB
EGAF50000929171 bam 53.4 MB
EGAF50000929172 bam 172.5 MB
EGAF50000929173 bam 1.2 GB
EGAF50000929174 bam 131.1 MB
EGAF50000929175 bam 7.3 MB
EGAF50000929176 bam 228.6 MB
EGAF50000929177 bam 145.2 MB
EGAF50000929178 bam 623.4 MB
EGAF50000929179 bam 57.0 MB
EGAF50000929180 bam 20.7 MB
EGAF50000929181 bam 519.0 MB
EGAF50000929182 bam 131.6 MB
EGAF50000929183 bam 528.1 MB
EGAF50000929184 bam 24.7 MB
EGAF50000929185 bam 72.4 MB
EGAF50000929186 bam 1.1 GB
EGAF50000929187 bam 745.3 MB
EGAF50000929188 bam 17.3 MB
EGAF50000929189 bam 10.5 MB
EGAF50000929190 bam 223.4 MB
EGAF50000929191 bam 30.7 MB
EGAF50000929192 bam 237.8 MB
EGAF50000929193 bam 38.2 MB
EGAF50000929194 bam 253.9 MB
EGAF50000929195 bam 292.3 MB
EGAF50000929196 bam 41.0 MB
EGAF50000929197 bam 265.0 MB
EGAF50000929198 bam 451.0 MB
EGAF50000929199 bam 543.1 MB
EGAF50000929200 bam 75.1 MB
EGAF50000929201 bam 124.1 MB
EGAF50000929202 bam 346.0 MB
EGAF50000929203 bam 624.5 MB
EGAF50000929204 bam 532.6 MB
EGAF50000929205 bam 246.4 MB
EGAF50000929206 bam 34.3 MB
EGAF50000929207 bam 31.4 MB
EGAF50000929208 bam 24.2 MB
EGAF50000929209 bam 249.7 MB
EGAF50000929210 bam 311.4 MB
EGAF50000929211 bam 251.1 MB
EGAF50000929212 bam 256.9 MB
EGAF50000929213 bam 20.2 MB
EGAF50000929214 bam 52.8 MB
EGAF50000929215 bam 53.9 MB
EGAF50000929216 bam 253.2 MB
EGAF50000929217 bam 293.6 MB
EGAF50000929218 bam 19.7 MB
EGAF50000929219 bam 28.1 MB
EGAF50000929220 bam 653.3 MB
EGAF50000929221 bam 171.4 MB
EGAF50000929222 bam 101.1 MB
EGAF50000929223 bam 273.9 MB
EGAF50000929224 bam 285.8 MB
EGAF50000929225 bam 269.2 MB
EGAF50000929226 bam 26.8 MB
EGAF50000929227 bam 35.0 MB
EGAF50000929228 bam 33.1 MB
EGAF50000929229 bam 40.9 MB
EGAF50000929230 bam 44.2 MB
EGAF50000929231 bam 16.9 MB
EGAF50000929232 bam 23.4 MB
EGAF50000929233 bam 170.5 MB
EGAF50000929234 bam 71.9 MB
EGAF50000929235 bam 199.3 MB
EGAF50000929236 bam 121.1 MB
EGAF50000929237 bam 4.0 GB
EGAF50000929238 bam 739.9 MB
EGAF50000929239 bam 463.9 MB
EGAF50000929240 bam 582.0 MB
EGAF50000929241 bam 637.8 MB
EGAF50000929242 bam 669.2 MB
EGAF50000929243 bam 18.9 MB
EGAF50000929244 bam 56.0 MB
EGAF50000929245 bam 38.9 MB
EGAF50000929246 bam 476.7 MB
EGAF50000929247 bam 36.6 MB
EGAF50000929248 bam 47.2 MB
EGAF50000929249 bam 315.4 MB
EGAF50000929250 bam 539.1 MB
EGAF50000929251 bam 214.4 MB
EGAF50000929252 bam 12.3 MB
EGAF50000929253 bam 20.6 MB
EGAF50000929254 bam 18.6 MB
EGAF50000929255 bam 54.0 MB
EGAF50000929256 bam 142.6 MB
EGAF50000929257 bam 14.6 MB
EGAF50000929258 bam 147.5 MB
EGAF50000929259 bam 25.2 MB
EGAF50000929260 bam 509.9 MB
EGAF50000929261 bam 112.2 MB
EGAF50000929262 bam 5.7 GB
EGAF50000929263 bam 298.4 MB
EGAF50000929264 bam 417.7 MB
EGAF50000929265 bam 269.8 MB
EGAF50000929266 bam 258.4 MB
EGAF50000929267 bam 265.6 MB
EGAF50000929268 bam 144.4 MB
EGAF50000929269 bam 579.1 MB
EGAF50000929270 bam 286.2 MB
EGAF50000929271 bam 61.7 MB
EGAF50000929272 bam 67.8 MB
EGAF50000929273 bam 27.7 MB
EGAF50000929274 bam 24.9 MB
EGAF50000929275 bam 512.3 MB
EGAF50000929276 bam 500.6 MB
EGAF50000929277 bam 20.6 MB
EGAF50000929278 bam 73.7 MB
EGAF50000929279 bam 274.9 MB
EGAF50000929280 bam 267.4 MB
EGAF50000929281 bam 307.0 MB
EGAF50000929282 bam 314.8 MB
EGAF50000929283 bam 14.5 MB
EGAF50000929284 bam 501.1 MB
EGAF50000929285 bam 497.1 MB
EGAF50000929286 bam 323.4 MB
EGAF50000929287 bam 11.1 MB
EGAF50000929288 bam 162.8 MB
EGAF50000929289 bam 153.4 MB
120 Files (36.7 GB)