About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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GeDi Oxford Nanopore Sequencing

The Jackson Laboratory Genetic Discovery (GeDi) Human Induced Pluripotent Stem Cell (hiPSC) Resource provides a collection of well-characterized clonal hiPSC lines derived from genetically diverse, healthy male and female donors. These lines and their associated genomic and transcriptomic data are made available for unrestricted academic and commercial research. The initial release includes eight hiPSC lines with whole-genome sequencing, DNA methylation, RNA-seq, and genotyping data, with additional lines and data types to follow. This resource enables studies of how human genetic background and sex influence molecular phenotypes, differentiation potential, and drug responses.

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GeDi Data Access

This dataset contains human genomic data generated from The Jackson Laboratory Genetic Discovery Human Induced Pluripotent Stem Cell (GeDi hiPSC) initiative (“Data”). Any person or entity accessing, downloading, or using this Data (“User”) acknowledges and agrees to the following Terms of Use: User will use the Data only for internal research purposes. User will comply with all applicable laws and regulations related to the use of the Data. User will not attempt to identify, contact, or otherwise re-identify individual research participants who are or may be the source of the Data. User will not link or combine the Data with any other data. User will not share, redistribute, sublicense, or sell the Data. User will acknowledge the dataset accession number and data contributors in all publications and presentations resulting from use of the Data. (Sample acknowledgement statement: This study makes use of data generated by The Jackson Laboratory's Genetic Diversity (GeDi) hiPSC initiative and deposited in the European Genome-phenome Archive (EGA) under study accession EGAS00001008380.). User acknowledges and agrees that The Jackson Laboratory: a) disclaims any warranties or representations, express or implied, as to fitness for a particular purpose, accuracy, quality or comprehensiveness of the Data; b) excludes and disclaims, to the fullest extent permitted by law, all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages (including direct, indirect, consequential, or incidental, damages or losses of any kind) and payments made by User that may arise (whether directly or indirectly) in any way whatsoever from use of the Data; and c) bears no responsibility for the further analysis or interpretation of the Data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001987 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000929550 fastq.gz 109.8 GB
EGAF50000929560 fastq.gz 87.2 GB
EGAF50000929571 fastq.gz 39.4 GB
EGAF50000929628 fastq.gz 57.4 GB
EGAF50000929675 fastq.gz 55.4 GB
EGAF50000929676 fastq.gz 132.4 GB
EGAF50000929687 fastq.gz 40.3 GB
EGAF50000929689 fastq.gz 28.2 GB
EGAF50000929690 fastq.gz 4.4 GB
EGAF50000929773 fastq.gz 104.3 GB
EGAF50000929774 fastq.gz 42.5 GB
EGAF50000929834 fastq.gz 28.9 GB
EGAF50000929882 fastq.gz 71.3 GB
EGAF50000929926 fastq.gz 78.1 GB
EGAF50000929936 fastq.gz 12.8 GB
15 Files (892.5 GB)