About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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GeDi bulk RNAseq

The Jackson Laboratory Genetic Discovery (GeDi) Human Induced Pluripotent Stem Cell (hiPSC) Resource provides a collection of well-characterized clonal hiPSC lines derived from genetically diverse, healthy male and female donors. These lines and their associated genomic and transcriptomic data are made available for unrestricted academic and commercial research. The initial release includes eight hiPSC lines with whole-genome sequencing, DNA methylation, RNA-seq, and genotyping data, with additional lines and data types to follow. This resource enables studies of how human genetic background and sex influence molecular phenotypes, differentiation potential, and drug responses.

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GeDi Data Access

This dataset contains human genomic data generated from The Jackson Laboratory Genetic Discovery Human Induced Pluripotent Stem Cell (GeDi hiPSC) initiative (“Data”). Any person or entity accessing, downloading, or using this Data (“User”) acknowledges and agrees to the following Terms of Use: User will use the Data only for internal research purposes. User will comply with all applicable laws and regulations related to the use of the Data. User will not attempt to identify, contact, or otherwise re-identify individual research participants who are or may be the source of the Data. User will not link or combine the Data with any other data. User will not share, redistribute, sublicense, or sell the Data. User will acknowledge the dataset accession number and data contributors in all publications and presentations resulting from use of the Data. (Sample acknowledgement statement: This study makes use of data generated by The Jackson Laboratory's Genetic Diversity (GeDi) hiPSC initiative and deposited in the European Genome-phenome Archive (EGA) under study accession EGAS00001008380.). User acknowledges and agrees that The Jackson Laboratory: a) disclaims any warranties or representations, express or implied, as to fitness for a particular purpose, accuracy, quality or comprehensiveness of the Data; b) excludes and disclaims, to the fullest extent permitted by law, all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages (including direct, indirect, consequential, or incidental, damages or losses of any kind) and payments made by User that may arise (whether directly or indirectly) in any way whatsoever from use of the Data; and c) bears no responsibility for the further analysis or interpretation of the Data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001988 RNASeq
  • "Genetically Diverse (GeDi)" changed to "Genetic Discovery (GeDi)"
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000929558 fastq.gz 2.3 GB
EGAF50000929561 fastq.gz 2.8 GB
EGAF50000929562 fastq.gz 2.7 GB
EGAF50000929563 fastq.gz 2.6 GB
EGAF50000929564 fastq.gz 2.6 GB
EGAF50000929565 fastq.gz 2.8 GB
EGAF50000929566 fastq.gz 2.8 GB
EGAF50000929567 fastq.gz 2.9 GB
EGAF50000929568 fastq.gz 2.3 GB
EGAF50000929569 fastq.gz 2.9 GB
EGAF50000929572 fastq.gz 2.3 GB
EGAF50000929573 fastq.gz 2.7 GB
EGAF50000929574 fastq.gz 2.8 GB
EGAF50000929575 fastq.gz 2.7 GB
EGAF50000929576 fastq.gz 2.8 GB
EGAF50000929577 fastq.gz 2.5 GB
EGAF50000929578 fastq.gz 2.6 GB
EGAF50000929579 fastq.gz 2.6 GB
EGAF50000929580 fastq.gz 2.7 GB
EGAF50000929581 fastq.gz 2.5 GB
EGAF50000929582 fastq.gz 2.6 GB
EGAF50000929583 fastq.gz 2.7 GB
EGAF50000929584 fastq.gz 3.1 GB
EGAF50000929585 fastq.gz 3.2 GB
EGAF50000929586 fastq.gz 2.4 GB
EGAF50000929587 fastq.gz 2.6 GB
EGAF50000929588 fastq.gz 2.4 GB
EGAF50000929589 fastq.gz 2.6 GB
EGAF50000929590 fastq.gz 2.6 GB
EGAF50000929591 fastq.gz 2.6 GB
EGAF50000929592 fastq.gz 2.5 GB
EGAF50000929593 fastq.gz 2.4 GB
EGAF50000929594 fastq.gz 2.5 GB
EGAF50000929595 fastq.gz 2.9 GB
EGAF50000929596 fastq.gz 2.6 GB
EGAF50000929597 fastq.gz 2.9 GB
EGAF50000929598 fastq.gz 2.6 GB
EGAF50000929599 fastq.gz 2.6 GB
EGAF50000929600 fastq.gz 3.1 GB
EGAF50000929601 fastq.gz 2.4 GB
EGAF50000929602 fastq.gz 2.7 GB
EGAF50000929603 fastq.gz 2.8 GB
EGAF50000929604 fastq.gz 2.8 GB
EGAF50000929605 fastq.gz 2.7 GB
EGAF50000929606 fastq.gz 2.6 GB
EGAF50000929607 fastq.gz 2.5 GB
EGAF50000929608 fastq.gz 2.5 GB
EGAF50000929609 fastq.gz 3.0 GB
EGAF50000929610 fastq.gz 2.5 GB
EGAF50000929611 fastq.gz 2.7 GB
EGAF50000929612 fastq.gz 2.8 GB
EGAF50000929613 fastq.gz 2.9 GB
EGAF50000929614 fastq.gz 2.8 GB
EGAF50000929615 fastq.gz 2.5 GB
EGAF50000929616 fastq.gz 2.6 GB
EGAF50000929617 fastq.gz 2.7 GB
EGAF50000929618 fastq.gz 2.8 GB
EGAF50000929619 fastq.gz 2.5 GB
EGAF50000929620 fastq.gz 2.7 GB
EGAF50000929629 fastq.gz 2.4 GB
EGAF50000929630 fastq.gz 2.5 GB
EGAF50000929631 fastq.gz 2.9 GB
EGAF50000929632 fastq.gz 2.4 GB
EGAF50000929634 fastq.gz 2.5 GB
EGAF50000929635 fastq.gz 2.8 GB
EGAF50000929636 fastq.gz 2.4 GB
EGAF50000929637 fastq.gz 3.0 GB
EGAF50000929638 fastq.gz 2.8 GB
EGAF50000929639 fastq.gz 2.8 GB
EGAF50000929641 fastq.gz 2.8 GB
EGAF50000929642 fastq.gz 2.7 GB
EGAF50000929643 fastq.gz 2.8 GB
EGAF50000929644 fastq.gz 2.7 GB
EGAF50000929645 fastq.gz 2.8 GB
EGAF50000929646 fastq.gz 3.1 GB
EGAF50000929647 fastq.gz 2.7 GB
EGAF50000929648 fastq.gz 2.8 GB
EGAF50000929649 fastq.gz 2.6 GB
EGAF50000929650 fastq.gz 2.3 GB
EGAF50000929651 fastq.gz 2.6 GB
EGAF50000929652 fastq.gz 2.6 GB
EGAF50000929653 fastq.gz 2.5 GB
EGAF50000929654 fastq.gz 2.6 GB
EGAF50000929655 fastq.gz 2.5 GB
EGAF50000929656 fastq.gz 2.9 GB
EGAF50000929658 fastq.gz 2.9 GB
EGAF50000929659 fastq.gz 2.8 GB
EGAF50000929660 fastq.gz 3.0 GB
EGAF50000929661 fastq.gz 3.1 GB
EGAF50000929663 fastq.gz 2.3 GB
EGAF50000929664 fastq.gz 2.4 GB
EGAF50000929665 fastq.gz 2.2 GB
EGAF50000929666 fastq.gz 2.5 GB
EGAF50000929667 fastq.gz 2.2 GB
EGAF50000929668 fastq.gz 2.7 GB
EGAF50000929669 fastq.gz 2.6 GB
EGAF50000929670 fastq.gz 2.6 GB
EGAF50000929671 fastq.gz 1.4 GB
EGAF50000929672 fastq.gz 2.5 GB
EGAF50000929673 fastq.gz 140.3 MB
EGAF50000929674 fastq.gz 2.4 GB
EGAF50000929677 fastq.gz 2.4 GB
EGAF50000929678 fastq.gz 2.7 GB
EGAF50000929679 fastq.gz 2.8 GB
EGAF50000929680 fastq.gz 2.8 GB
EGAF50000929681 fastq.gz 2.4 GB
EGAF50000929682 fastq.gz 3.0 GB
EGAF50000929683 fastq.gz 2.7 GB
EGAF50000929688 fastq.gz 2.5 GB
EGAF50000929691 fastq.gz 2.9 GB
EGAF50000929692 fastq.gz 3.7 GB
EGAF50000929693 fastq.gz 4.0 GB
EGAF50000929694 fastq.gz 3.4 GB
EGAF50000929695 fastq.gz 3.5 GB
EGAF50000929696 fastq.gz 5.3 GB
EGAF50000929697 fastq.gz 3.8 GB
EGAF50000929703 fastq.gz 2.4 GB
EGAF50000929704 fastq.gz 3.1 GB
EGAF50000929705 fastq.gz 2.6 GB
EGAF50000929706 fastq.gz 2.7 GB
EGAF50000929707 fastq.gz 2.8 GB
EGAF50000929708 fastq.gz 2.7 GB
EGAF50000929709 fastq.gz 2.6 GB
EGAF50000929710 fastq.gz 2.9 GB
EGAF50000929711 fastq.gz 3.0 GB
EGAF50000929712 fastq.gz 2.6 GB
EGAF50000929713 fastq.gz 2.9 GB
EGAF50000929714 fastq.gz 2.8 GB
EGAF50000929715 fastq.gz 2.8 GB
EGAF50000929716 fastq.gz 3.0 GB
EGAF50000929717 fastq.gz 3.1 GB
EGAF50000929718 fastq.gz 3.2 GB
EGAF50000929719 fastq.gz 3.0 GB
EGAF50000929720 fastq.gz 3.0 GB
EGAF50000929721 fastq.gz 2.7 GB
EGAF50000929722 fastq.gz 2.7 GB
EGAF50000929723 fastq.gz 2.6 GB
EGAF50000929724 fastq.gz 2.6 GB
EGAF50000929725 fastq.gz 2.7 GB
EGAF50000929726 fastq.gz 2.5 GB
EGAF50000929727 fastq.gz 2.2 GB
EGAF50000929728 fastq.gz 2.3 GB
EGAF50000929729 fastq.gz 2.4 GB
EGAF50000929730 fastq.gz 2.4 GB
EGAF50000929731 fastq.gz 2.7 GB
EGAF50000929732 fastq.gz 2.8 GB
EGAF50000929733 fastq.gz 3.0 GB
EGAF50000929734 fastq.gz 3.1 GB
EGAF50000929737 fastq.gz 2.4 GB
EGAF50000929738 fastq.gz 2.7 GB
EGAF50000929739 fastq.gz 2.4 GB
EGAF50000929740 fastq.gz 2.5 GB
EGAF50000929741 fastq.gz 2.4 GB
EGAF50000929742 fastq.gz 2.9 GB
EGAF50000929743 fastq.gz 2.5 GB
EGAF50000929744 fastq.gz 2.5 GB
EGAF50000929745 fastq.gz 2.6 GB
EGAF50000929746 fastq.gz 2.8 GB
EGAF50000929747 fastq.gz 2.8 GB
EGAF50000929748 fastq.gz 2.8 GB
EGAF50000929749 fastq.gz 2.7 GB
EGAF50000929750 fastq.gz 2.8 GB
EGAF50000929751 fastq.gz 2.8 GB
EGAF50000929752 fastq.gz 2.8 GB
EGAF50000929753 fastq.gz 2.9 GB
EGAF50000929754 fastq.gz 2.8 GB
EGAF50000929755 fastq.gz 2.7 GB
EGAF50000929756 fastq.gz 2.5 GB
EGAF50000929757 fastq.gz 2.7 GB
EGAF50000929758 fastq.gz 2.9 GB
EGAF50000929759 fastq.gz 2.9 GB
EGAF50000929760 fastq.gz 3.0 GB
EGAF50000929761 fastq.gz 2.6 GB
EGAF50000929762 fastq.gz 2.7 GB
EGAF50000929763 fastq.gz 2.9 GB
EGAF50000929764 fastq.gz 2.8 GB
EGAF50000929765 fastq.gz 2.9 GB
EGAF50000929766 fastq.gz 2.6 GB
EGAF50000929767 fastq.gz 2.9 GB
EGAF50000929768 fastq.gz 2.9 GB
EGAF50000929771 fastq.gz 3.5 GB
EGAF50000929772 fastq.gz 2.7 GB
EGAF50000929800 fastq.gz 2.6 GB
EGAF50000929801 fastq.gz 2.5 GB
EGAF50000929802 fastq.gz 2.5 GB
EGAF50000929803 fastq.gz 2.7 GB
EGAF50000929804 fastq.gz 2.6 GB
EGAF50000929805 fastq.gz 2.7 GB
EGAF50000929806 fastq.gz 2.3 GB
EGAF50000929807 fastq.gz 2.6 GB
EGAF50000929808 fastq.gz 2.8 GB
EGAF50000929809 fastq.gz 2.9 GB
EGAF50000929810 fastq.gz 2.6 GB
EGAF50000929811 fastq.gz 2.1 GB
EGAF50000929812 fastq.gz 2.1 GB
EGAF50000929813 fastq.gz 2.6 GB
EGAF50000929814 fastq.gz 3.1 GB
EGAF50000929815 fastq.gz 3.3 GB
EGAF50000929816 fastq.gz 3.4 GB
EGAF50000929817 fastq.gz 2.9 GB
EGAF50000929818 fastq.gz 2.7 GB
EGAF50000929819 fastq.gz 3.0 GB
EGAF50000929820 fastq.gz 3.1 GB
EGAF50000929821 fastq.gz 3.5 GB
EGAF50000929822 fastq.gz 3.1 GB
EGAF50000929823 fastq.gz 2.6 GB
EGAF50000929824 fastq.gz 2.7 GB
EGAF50000929825 fastq.gz 2.5 GB
EGAF50000929826 fastq.gz 2.5 GB
EGAF50000929827 fastq.gz 2.5 GB
EGAF50000929828 fastq.gz 2.8 GB
EGAF50000929829 fastq.gz 2.9 GB
EGAF50000929830 fastq.gz 2.2 GB
EGAF50000929831 fastq.gz 3.0 GB
EGAF50000929832 fastq.gz 2.4 GB
EGAF50000929833 fastq.gz 2.4 GB
EGAF50000929841 fastq.gz 3.4 GB
EGAF50000929842 fastq.gz 3.4 GB
EGAF50000929843 fastq.gz 3.1 GB
EGAF50000929844 fastq.gz 3.2 GB
EGAF50000929845 fastq.gz 3.4 GB
EGAF50000929851 fastq.gz 2.7 GB
EGAF50000929852 fastq.gz 2.8 GB
EGAF50000929853 fastq.gz 2.8 GB
EGAF50000929867 fastq.gz 2.6 GB
EGAF50000929868 fastq.gz 2.3 GB
EGAF50000929869 fastq.gz 2.8 GB
EGAF50000929870 fastq.gz 2.4 GB
EGAF50000929871 fastq.gz 2.5 GB
EGAF50000929872 fastq.gz 2.7 GB
EGAF50000929873 fastq.gz 2.7 GB
EGAF50000929874 fastq.gz 3.1 GB
EGAF50000929875 fastq.gz 454.8 MB
EGAF50000929876 fastq.gz 2.7 GB
EGAF50000929877 fastq.gz 2.8 GB
EGAF50000929878 fastq.gz 2.7 GB
EGAF50000929879 fastq.gz 2.7 GB
EGAF50000929880 fastq.gz 3.0 GB
EGAF50000929881 fastq.gz 2.9 GB
EGAF50000929895 fastq.gz 3.5 GB
EGAF50000929896 fastq.gz 2.7 GB
EGAF50000929897 fastq.gz 3.6 GB
EGAF50000929898 fastq.gz 2.4 GB
EGAF50000929899 fastq.gz 4.0 GB
EGAF50000929900 fastq.gz 3.7 GB
EGAF50000929901 fastq.gz 3.1 GB
EGAF50000929902 fastq.gz 3.0 GB
EGAF50000929903 fastq.gz 3.3 GB
EGAF50000929904 fastq.gz 3.4 GB
EGAF50000929905 fastq.gz 3.0 GB
EGAF50000929906 fastq.gz 2.4 GB
EGAF50000929907 fastq.gz 3.5 GB
EGAF50000929908 fastq.gz 3.6 GB
EGAF50000929909 fastq.gz 3.6 GB
EGAF50000929910 fastq.gz 3.0 GB
EGAF50000929911 fastq.gz 3.4 GB
EGAF50000929912 fastq.gz 2.9 GB
EGAF50000929913 fastq.gz 3.5 GB
EGAF50000929914 fastq.gz 2.7 GB
EGAF50000929915 fastq.gz 3.9 GB
EGAF50000929916 fastq.gz 3.4 GB
EGAF50000929917 fastq.gz 3.5 GB
EGAF50000929920 fastq.gz 3.8 GB
EGAF50000929921 fastq.gz 3.1 GB
EGAF50000929922 fastq.gz 3.6 GB
EGAF50000929923 fastq.gz 3.5 GB
EGAF50000929924 fastq.gz 5.4 GB
EGAF50000929925 fastq.gz 3.0 GB
EGAF50000929928 fastq.gz 3.6 GB
EGAF50000929929 fastq.gz 3.4 GB
EGAF50000929930 fastq.gz 3.8 GB
EGAF50000929931 fastq.gz 3.9 GB
EGAF50000929932 fastq.gz 2.8 GB
EGAF50000929933 fastq.gz 2.8 GB
EGAF50000929934 fastq.gz 3.5 GB
EGAF50000929935 fastq.gz 2.8 GB
276 Files (773.2 GB)