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Germline WES data for paired or relapsed neuroblastoma

Whole exome sequencing (WES) germline data was analysed for 21 samples (G) from 20 neuroblastoma patients. Seventeen samples were sequenced using the Illumina TruSeq Rapid Exome kit and NextSeq500 platform at 30x, while the Nextera Library Prep Kit and Illumina’s NovaSeq platform at 90x was used for the 4 remaining samples. Germline variants were called using GATK HaplotypeCaller v. 4.0.11.0. VCF files from the analyses are included in this dataset.

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DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

VIVO Biobank Samples Data Access Policy

VIVO Biobank Samples Data Access Policy 1. Introduction This policy governs access to the genomic and phenotypic data from the VIVO Biobank Group studies deposited at the European Genome-phenome Archive (EGA). The data was collected for the purpose of genetic studies on childhood cancers. 2. Data Access Committee (DAC) Access to the data is managed by Newcastle University on behalf of the VIVO Biobank through the VIVO project specific Data Access Committee. Decisions on access are made exclusively based on scientific and ethical criteria in compliance with the original informed consent. 3. Terms of Access To request access, users must: • Be a bona fide researcher affiliated with a recognized research institution. • Provide a brief Research Project Description (max 500 words). • Submit a signed Data Access Agreement (DAA), which is a legally binding contract between the requester's institution and the DAC. 4. Permitted Use Data use is restricted based on the GA4GH Data Use Ontology (DUO) codes assigned to this dataset: • US (user-specific): This data use modifier indicates that use is limited to use by approved users. • Re-identification Prohibited: Requesters must agree not to attempt to re-identify any individual participant. • For additional clinical data, collaboration with members of the DAC is required. 5. Data Security Requirements Users must implement technical safeguards, including: • Storage on secure institutional computer systems behind a firewall. • Encryption of data if stored on portable devices (e.g., USB keys). • Access limited to authorized personnel listed in the DAA. 6. Publication & Acknowledgment Users must acknowledge the VIVO Biobank, members of the DAC, and the EGA in any resulting publications, citing the specific study accession number.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002000 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000932227 vcf 32.7 MB Report
EGAF50000932228 vcf 42.7 MB Report
EGAF50000932229 vcf 41.3 MB Report
EGAF50000932230 vcf 30.3 MB Report
EGAF50000932237 vcf 11.3 MB Report
EGAF50000932238 vcf 9.1 MB Report
EGAF50000932239 vcf 9.8 MB Report
EGAF50000932240 vcf 9.9 MB Report
EGAF50000932241 vcf 9.9 MB Report
EGAF50000932242 vcf 8.5 MB Report
EGAF50000932243 vcf 9.9 MB Report
EGAF50000932244 vcf 9.3 MB Report
EGAF50000932245 vcf 9.2 MB Report
EGAF50000932246 vcf 11.6 MB Report
EGAF50000932247 vcf 10.0 MB Report
EGAF50000932248 vcf 9.2 MB Report
EGAF50000932249 vcf 9.2 MB Report
EGAF50000932250 vcf 9.0 MB Report
EGAF50000932251 vcf 9.9 MB Report
EGAF50000932252 vcf 7.8 MB Report
EGAF50000932253 vcf 9.2 MB Report
21 Files (309.8 MB)