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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Bile microbiota profiling in obese and non-obese patients: a comparison of shotgun metagenomics and 16S rRNA amplicon sequencing

We analysed by shotgun metagenomics 64 patient bile metagenomes and one negative control.

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DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

Modifiersbona fide researchers

Data Access Policy for Biliary Microbiota Metagenome Study (EGAC50000001028)

This policy governs access to metagenomic sequencing data and associated clinical metadata generated from the study "Exploring the biliary microbiota in obese and non-obese patients with symptomatic gallstones." Eligibility: Access is available to bona fide researchers affiliated with recognized academic, research, or healthcare institutions. Permitted Uses: Data may be used for non-commercial biomedical research related to the human microbiome, gastrointestinal disease, hepatobiliary disease, obesity, or related conditions. Secondary analyses and meta-analyses are permitted within these bounds. Prohibited Uses: (a) Any attempt to re-identify study participants; (b) commercial use without separate written agreement; (c) redistribution of raw data to third parties not covered by an approved data access agreement. Data Security: Approved users must store data on institutionally managed, encrypted, and access-controlled systems. Data must not be transferred to unauthorized individuals or systems. Upon completion of the approved research project, all copies of the data must be destroyed or returned. Privacy and Compliance: All data handling must comply with applicable data protection regulations, including the EU General Data Protection Regulation (GDPR) where applicable. Users must ensure that their institutional review board or ethics committee has approved the proposed research. Publication and Acknowledgment: Any publications or presentations resulting from use of this dataset must cite the original study and the EGA dataset accession number. Duration: Access is granted for a period of 2 years, renewable upon request to the Data Access Committee. Breach: Any breach of this policy may result in immediate revocation of access and notification to the user's institution.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002005 Metagenomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000932880 fastq.gz 475.2 MB
EGAF50000932881 fastq.gz 666.1 MB
EGAF50000932882 fastq.gz 410.1 MB
EGAF50000932883 fastq.gz 470.2 MB
EGAF50000932884 fastq.gz 494.6 MB
EGAF50000932885 fastq.gz 538.0 MB
EGAF50000932886 fastq.gz 365.4 MB
EGAF50000932887 fastq.gz 394.0 MB
EGAF50000932888 fastq.gz 410.6 MB
EGAF50000932889 fastq.gz 414.1 MB
EGAF50000932890 fastq.gz 427.4 MB
EGAF50000932891 fastq.gz 484.7 MB
EGAF50000932892 fastq.gz 527.6 MB
EGAF50000932893 fastq.gz 408.2 MB
EGAF50000932894 fastq.gz 586.6 MB
EGAF50000932895 fastq.gz 641.0 MB
EGAF50000932896 fastq.gz 387.2 MB
EGAF50000932897 fastq.gz 411.0 MB
EGAF50000932898 fastq.gz 641.1 MB
EGAF50000932899 fastq.gz 431.2 MB
EGAF50000932900 fastq.gz 1.3 GB
EGAF50000932901 fastq.gz 384.7 MB
EGAF50000932902 fastq.gz 444.8 MB
EGAF50000932903 fastq.gz 1.2 GB
EGAF50000932904 fastq.gz 388.9 MB
EGAF50000932905 fastq.gz 338.8 MB
EGAF50000932906 fastq.gz 367.5 MB
EGAF50000932907 fastq.gz 399.6 MB
EGAF50000932908 fastq.gz 446.8 MB
EGAF50000932909 fastq.gz 381.1 MB
EGAF50000932910 fastq.gz 353.4 MB
EGAF50000932911 fastq.gz 431.0 MB
EGAF50000932912 fastq.gz 463.4 MB
EGAF50000932913 fastq.gz 328 Bytes
EGAF50000932914 fastq.gz 333 Bytes
EGAF50000932915 fastq.gz 380.1 MB
EGAF50000932916 fastq.gz 379.7 MB
EGAF50000932917 fastq.gz 442.4 MB
EGAF50000932918 fastq.gz 462.7 MB
EGAF50000932919 fastq.gz 376.2 MB
EGAF50000932920 fastq.gz 449.7 MB
EGAF50000932921 fastq.gz 470.5 MB
EGAF50000932922 fastq.gz 433.0 MB
EGAF50000932923 fastq.gz 416.7 MB
EGAF50000932924 fastq.gz 416.2 MB
EGAF50000932925 fastq.gz 450.4 MB
EGAF50000932926 fastq.gz 437.4 MB
EGAF50000932927 fastq.gz 457.1 MB
EGAF50000932928 fastq.gz 425.4 MB
EGAF50000932929 fastq.gz 455.9 MB
EGAF50000932930 fastq.gz 410.9 MB
EGAF50000932931 fastq.gz 416.0 MB
EGAF50000932932 fastq.gz 442.5 MB
EGAF50000932933 fastq.gz 392.9 MB
EGAF50000932934 fastq.gz 417.7 MB
EGAF50000932935 fastq.gz 432.3 MB
EGAF50000932936 fastq.gz 464.6 MB
EGAF50000932937 fastq.gz 430.5 MB
EGAF50000932938 fastq.gz 466.7 MB
EGAF50000932939 fastq.gz 431.7 MB
EGAF50000932940 fastq.gz 468.9 MB
EGAF50000932941 fastq.gz 364.6 MB
EGAF50000932942 fastq.gz 391.9 MB
EGAF50000932943 fastq.gz 463.0 MB
EGAF50000932944 fastq.gz 509.5 MB
EGAF50000932945 fastq.gz 461.2 MB
EGAF50000932946 fastq.gz 492.4 MB
EGAF50000932947 fastq.gz 527.2 MB
EGAF50000932948 fastq.gz 581.6 MB
EGAF50000932949 fastq.gz 349.6 MB
EGAF50000932950 fastq.gz 416.7 MB
EGAF50000932951 fastq.gz 407.3 MB
EGAF50000932952 fastq.gz 385.2 MB
EGAF50000932953 fastq.gz 376.2 MB
EGAF50000932954 fastq.gz 408.5 MB
EGAF50000932955 fastq.gz 419.1 MB
EGAF50000932956 fastq.gz 448.5 MB
EGAF50000932957 fastq.gz 491.8 MB
EGAF50000932958 fastq.gz 512.6 MB
EGAF50000932959 fastq.gz 383.8 MB
EGAF50000932960 fastq.gz 413.9 MB
EGAF50000932961 fastq.gz 461.6 MB
EGAF50000932962 fastq.gz 488.0 MB
EGAF50000932963 fastq.gz 404.3 MB
EGAF50000932964 fastq.gz 426.5 MB
EGAF50000932965 fastq.gz 391.8 MB
EGAF50000932966 fastq.gz 409.9 MB
EGAF50000932967 fastq.gz 513.7 MB
EGAF50000932968 fastq.gz 536.2 MB
EGAF50000932969 fastq.gz 393.1 MB
EGAF50000932970 fastq.gz 428.0 MB
EGAF50000932971 fastq.gz 396.6 MB
EGAF50000932972 fastq.gz 432.0 MB
EGAF50000932973 fastq.gz 394.7 MB
EGAF50000932974 fastq.gz 432.2 MB
EGAF50000932975 fastq.gz 467.7 MB
EGAF50000932976 fastq.gz 512.4 MB
EGAF50000932977 fastq.gz 641.1 MB
EGAF50000932978 fastq.gz 708.5 MB
EGAF50000932979 fastq.gz 381.5 MB
EGAF50000932980 fastq.gz 412.0 MB
EGAF50000932981 fastq.gz 565.2 MB
EGAF50000932982 fastq.gz 406.2 MB
EGAF50000932983 fastq.gz 427.6 MB
EGAF50000932984 fastq.gz 407.2 MB
EGAF50000932985 fastq.gz 439.9 MB
EGAF50000932986 fastq.gz 430.5 MB
EGAF50000932987 fastq.gz 479.5 MB
EGAF50000932988 fastq.gz 341.5 MB
EGAF50000932989 fastq.gz 371.3 MB
EGAF50000932990 fastq.gz 481.9 MB
EGAF50000932991 fastq.gz 523.1 MB
EGAF50000932992 fastq.gz 717.1 MB
EGAF50000932993 fastq.gz 790.8 MB
EGAF50000932994 fastq.gz 354.0 MB
EGAF50000932995 fastq.gz 373.1 MB
EGAF50000932996 fastq.gz 396.6 MB
EGAF50000932997 fastq.gz 423.0 MB
EGAF50000932998 fastq.gz 373.3 MB
EGAF50000932999 fastq.gz 403.0 MB
EGAF50000933000 fastq.gz 398.4 MB
EGAF50000933001 fastq.gz 436.8 MB
EGAF50000933002 fastq.gz 475.8 MB
EGAF50000933003 fastq.gz 435.1 MB
EGAF50000933004 fastq.gz 608.8 MB
EGAF50000933005 fastq.gz 668.0 MB
EGAF50000933006 fastq.gz 381.2 MB
EGAF50000933007 fastq.gz 408.6 MB
EGAF50000933008 fastq.gz 325.8 MB
EGAF50000933009 fastq.gz 346.4 MB
130 Files (59.0 GB)