About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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transcriptomics for SYNG-BC1 cohort

The goal of IMMUcan is to understand how the immune system interacts with tumors and how therapeutic interventions influence this interaction. This cohort includes This dataset contains transcriptomics data processed with the STAR pipeline. Two sequencing kits were employed: Roche KAPA for high-quality RNA samples and Takara SMART-Seq Stranded for samples with limited RNA quantities. It contains gene-level counts.

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0045054

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Terms of use to access IMMUcan data v2.0

The applicant needs to agree with the Terms of use to access IMMUcan data through EGA.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002010 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000933590 fastq.gz 8.0 GB
EGAF50000933591 fastq.gz 7.1 GB
EGAF50000933592 fastq.gz 10.7 GB
EGAF50000933593 fastq.gz 8.3 GB
EGAF50000933594 fastq.gz 7.1 GB
EGAF50000933595 fastq.gz 7.4 GB
EGAF50000933596 fastq.gz 5.6 GB
EGAF50000933597 fastq.gz 7.0 GB
EGAF50000933598 fastq.gz 7.3 GB
EGAF50000933599 fastq.gz 8.0 GB
EGAF50000933600 fastq.gz 10.3 GB
EGAF50000933601 fastq.gz 7.1 GB
EGAF50000933602 fastq.gz 6.5 GB
EGAF50000933603 fastq.gz 13.5 GB
EGAF50000933604 fastq.gz 6.8 GB
EGAF50000933605 fastq.gz 10.3 GB
EGAF50000933606 fastq.gz 7.6 GB
EGAF50000933607 fastq.gz 12.2 GB
EGAF50000933608 fastq.gz 8.3 GB
EGAF50000933609 fastq.gz 6.7 GB
EGAF50000933610 fastq.gz 5.6 GB
EGAF50000933611 fastq.gz 9.7 GB
EGAF50000933612 fastq.gz 7.3 GB
EGAF50000933613 fastq.gz 11.8 GB
EGAF50000933614 fastq.gz 9.6 GB
EGAF50000933615 fastq.gz 6.0 GB
EGAF50000933616 fastq.gz 11.4 GB
EGAF50000933617 fastq.gz 6.7 GB
EGAF50000933618 fastq.gz 8.3 GB
EGAF50000933619 fastq.gz 4.7 GB
EGAF50000933620 fastq.gz 9.3 GB
EGAF50000933621 fastq.gz 6.7 GB
EGAF50000933622 fastq.gz 8.6 GB
EGAF50000933623 fastq.gz 9.0 GB
EGAF50000933624 fastq.gz 11.5 GB
EGAF50000933625 fastq.gz 8.0 GB
EGAF50000933626 fastq.gz 7.5 GB
EGAF50000933627 fastq.gz 6.5 GB
EGAF50000933628 fastq.gz 7.1 GB
EGAF50000933629 fastq.gz 10.7 GB
EGAF50000933630 fastq.gz 7.5 GB
EGAF50000933631 fastq.gz 7.1 GB
EGAF50000933632 fastq.gz 10.7 GB
EGAF50000933633 fastq.gz 7.1 GB
EGAF50000933634 fastq.gz 7.6 GB
EGAF50000933635 fastq.gz 6.7 GB
EGAF50000933636 fastq.gz 6.0 GB
EGAF50000933637 fastq.gz 6.3 GB
EGAF50000933638 fastq.gz 8.2 GB
EGAF50000933639 fastq.gz 8.5 GB
EGAF50000933640 fastq.gz 8.0 GB
EGAF50000933641 fastq.gz 7.2 GB
EGAF50000933642 fastq.gz 9.0 GB
EGAF50000933643 fastq.gz 5.3 GB
EGAF50000933644 fastq.gz 9.0 GB
EGAF50000933645 fastq.gz 9.3 GB
EGAF50000933646 fastq.gz 8.9 GB
EGAF50000933647 fastq.gz 9.5 GB
EGAF50000933648 fastq.gz 7.6 GB
EGAF50000933649 fastq.gz 8.6 GB
EGAF50000933650 fastq.gz 4.3 GB
EGAF50000933651 fastq.gz 7.6 GB
EGAF50000933652 fastq.gz 7.6 GB
EGAF50000933653 fastq.gz 12.5 GB
EGAF50000933654 fastq.gz 9.3 GB
EGAF50000933655 fastq.gz 9.5 GB
EGAF50000933656 fastq.gz 6.0 GB
EGAF50000933657 fastq.gz 6.6 GB
EGAF50000933658 fastq.gz 8.0 GB
EGAF50000933659 fastq.gz 9.7 GB
EGAF50000933660 fastq.gz 9.8 GB
EGAF50000933661 fastq.gz 8.0 GB
EGAF50000933662 fastq.gz 5.1 GB
EGAF50000933663 fastq.gz 6.8 GB
EGAF50000933664 fastq.gz 9.0 GB
EGAF50000933665 fastq.gz 8.2 GB
EGAF50000933666 fastq.gz 7.6 GB
EGAF50000933667 fastq.gz 11.8 GB
EGAF50000933668 fastq.gz 7.9 GB
EGAF50000933669 fastq.gz 8.1 GB
EGAF50000933670 fastq.gz 9.3 GB
EGAF50000933671 fastq.gz 5.6 GB
EGAF50000933672 fastq.gz 6.9 GB
EGAF50000933673 fastq.gz 5.1 GB
EGAF50000933674 fastq.gz 8.0 GB
EGAF50000933675 fastq.gz 11.9 GB
EGAF50000933676 fastq.gz 7.2 GB
EGAF50000933677 fastq.gz 9.4 GB
EGAF50000933678 fastq.gz 9.4 GB
EGAF50000933679 fastq.gz 7.6 GB
EGAF50000933680 fastq.gz 9.3 GB
EGAF50000933681 fastq.gz 10.8 GB
EGAF50000933682 fastq.gz 7.8 GB
EGAF50000933683 fastq.gz 8.9 GB
EGAF50000933684 fastq.gz 9.0 GB
EGAF50000933685 fastq.gz 13.3 GB
EGAF50000933686 fastq.gz 11.3 GB
EGAF50000933687 fastq.gz 8.0 GB
EGAF50000933688 fastq.gz 11.7 GB
EGAF50000933689 fastq.gz 8.4 GB
EGAF50000933690 fastq.gz 4.7 GB
EGAF50000933691 fastq.gz 5.7 GB
EGAF50000933692 fastq.gz 10.7 GB
EGAF50000933693 fastq.gz 8.5 GB
EGAF50000933694 fastq.gz 6.8 GB
EGAF50000933695 fastq.gz 8.0 GB
EGAF50000933696 fastq.gz 8.6 GB
EGAF50000933697 fastq.gz 8.4 GB
EGAF50000933698 fastq.gz 8.0 GB
EGAF50000933699 fastq.gz 7.5 GB
EGAF50000933700 fastq.gz 11.8 GB
EGAF50000933701 fastq.gz 6.3 GB
EGAF50000933702 fastq.gz 9.1 GB
EGAF50000933703 fastq.gz 7.0 GB
EGAF50000933704 fastq.gz 9.5 GB
EGAF50000933705 fastq.gz 8.3 GB
EGAF50000933706 fastq.gz 8.3 GB
EGAF50000933707 fastq.gz 6.8 GB
EGAF50000933708 fastq.gz 8.6 GB
EGAF50000933709 fastq.gz 6.9 GB
EGAF50000933710 fastq.gz 9.6 GB
EGAF50000933711 fastq.gz 5.3 GB
EGAF50000933712 fastq.gz 6.8 GB
EGAF50000933713 fastq.gz 9.2 GB
EGAF50000933714 fastq.gz 7.5 GB
EGAF50000933715 fastq.gz 9.9 GB
EGAF50000933716 fastq.gz 4.4 GB
EGAF50000933717 fastq.gz 9.4 GB
EGAF50000933718 fastq.gz 8.4 GB
EGAF50000933719 fastq.gz 6.8 GB
EGAF50000933720 fastq.gz 7.8 GB
EGAF50000933721 fastq.gz 9.2 GB
EGAF50000933722 fastq.gz 6.9 GB
EGAF50000933723 fastq.gz 8.2 GB
EGAF50000933724 fastq.gz 6.2 GB
EGAF50000933725 fastq.gz 9.3 GB
EGAF50000933726 fastq.gz 10.7 GB
EGAF50000933727 fastq.gz 5.1 GB
EGAF50000933728 fastq.gz 7.3 GB
EGAF50000933729 fastq.gz 7.8 GB
EGAF50000933730 fastq.gz 6.6 GB
EGAF50000933731 fastq.gz 9.2 GB
EGAF50000933732 fastq.gz 7.3 GB
EGAF50000933733 fastq.gz 5.0 GB
EGAF50000933734 fastq.gz 7.3 GB
EGAF50000933735 fastq.gz 6.5 GB
EGAF50000933736 fastq.gz 7.7 GB
EGAF50000933737 fastq.gz 6.5 GB
EGAF50000933738 fastq.gz 6.4 GB
EGAF50000933739 fastq.gz 8.8 GB
EGAF50000933740 fastq.gz 6.9 GB
EGAF50000933741 fastq.gz 9.0 GB
EGAF50000933742 fastq.gz 5.6 GB
EGAF50000933743 fastq.gz 9.2 GB
EGAF50000933744 fastq.gz 7.5 GB
EGAF50000933745 fastq.gz 5.0 GB
EGAF50000933746 fastq.gz 8.5 GB
EGAF50000933747 fastq.gz 8.0 GB
EGAF50000933748 fastq.gz 7.4 GB
EGAF50000933749 fastq.gz 9.8 GB
EGAF50000933750 fastq.gz 5.8 GB
EGAF50000933751 fastq.gz 7.4 GB
EGAF50000933752 fastq.gz 6.9 GB
EGAF50000933753 fastq.gz 7.2 GB
EGAF50000933754 fastq.gz 6.7 GB
EGAF50000933755 fastq.gz 7.4 GB
EGAF50000933756 fastq.gz 8.7 GB
EGAF50000933757 fastq.gz 7.6 GB
EGAF50000933758 fastq.gz 7.2 GB
EGAF50000933759 fastq.gz 6.9 GB
EGAF50000933760 fastq.gz 7.5 GB
EGAF50000933761 fastq.gz 10.8 GB
EGAF50000933762 fastq.gz 5.9 GB
EGAF50000933763 fastq.gz 9.0 GB
EGAF50000933764 fastq.gz 8.2 GB
EGAF50000933765 fastq.gz 6.6 GB
EGAF50000933766 fastq.gz 8.3 GB
EGAF50000933767 fastq.gz 8.1 GB
EGAF50000933768 fastq.gz 6.8 GB
EGAF50000933769 fastq.gz 5.0 GB
EGAF50000933770 fastq.gz 7.5 GB
EGAF50000933771 fastq.gz 7.6 GB
EGAF50000933772 fastq.gz 9.1 GB
EGAF50000933773 fastq.gz 10.6 GB
EGAF50000933774 fastq.gz 9.1 GB
EGAF50000933775 fastq.gz 8.7 GB
EGAF50000933776 fastq.gz 7.5 GB
EGAF50000933777 fastq.gz 7.1 GB
EGAF50000933800 fastq.gz 7.8 GB
EGAF50000933967 fastq.gz 6.3 GB
EGAF50000934141 txt 1.2 MB
EGAF50000934143 txt 1.2 MB
EGAF50000934144 txt 1.2 MB
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EGAF50000934150 txt 1.2 MB
EGAF50000934153 txt 1.2 MB
EGAF50000934156 txt 1.2 MB
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EGAF50000934162 txt 1.2 MB
EGAF50000934165 txt 1.2 MB
EGAF50000934168 txt 1.2 MB
EGAF50000934171 txt 1.2 MB
EGAF50000934174 txt 1.2 MB
EGAF50000934177 txt 1.2 MB
EGAF50000934180 txt 1.2 MB
EGAF50000934183 txt 1.2 MB
EGAF50000934186 txt 1.2 MB
EGAF50000934189 txt 1.2 MB
EGAF50000934192 txt 1.2 MB
EGAF50000934195 txt 1.2 MB
EGAF50000934198 txt 1.2 MB
EGAF50000934201 txt 1.2 MB
EGAF50000934204 txt 1.2 MB
EGAF50000934207 txt 1.2 MB
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EGAF50000934222 txt 1.2 MB
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EGAF50000934285 txt 1.2 MB
EGAF50000934288 txt 1.2 MB
EGAF50000934291 txt 1.2 MB
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EGAF50000934297 txt 1.2 MB
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EGAF50000934327 txt 1.2 MB
EGAF50000934330 txt 1.2 MB
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EGAF50000934336 txt 1.2 MB
EGAF50000934339 txt 1.2 MB
EGAF50000934342 txt 1.2 MB
EGAF50000934345 txt 1.2 MB
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EGAF50000934351 txt 1.2 MB
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EGAF50000934375 txt 1.2 MB
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EGAF50000934381 txt 1.2 MB
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EGAF50000934390 txt 1.2 MB
EGAF50000934393 txt 1.2 MB
EGAF50000934396 txt 1.2 MB
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EGAF50000934405 txt 1.2 MB
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EGAF50000934429 txt 1.2 MB
EGAF50000934432 fastq.gz 10.7 GB
EGAF50000934433 fastq.gz 10.6 GB
EGAF50000934434 fastq.gz 11.6 GB
EGAF50000934435 fastq.gz 11.5 GB
EGAF50000934436 fastq.gz 14.6 GB
EGAF50000934437 fastq.gz 14.4 GB
EGAF50000934438 fastq.gz 11.3 GB
EGAF50000934439 fastq.gz 11.3 GB
EGAF50000934440 txt 1.3 MB
297 Files (1.6 TB)