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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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transcriptomics for IMMU-RCC cohort

The goal of IMMUcan is to understand how the immune system interacts with tumors and how therapeutic interventions influence this interaction. This cohort includes patient with confirmed metastatic RCC, naïve of treatment in the metastatic settings, to be treated in 1st line. This dataset contains transcriptomics data processed with the STAR pipeline. Two sequencing kits were employed: Roche KAPA for high-quality RNA samples and Takara SMART-Seq Stranded for samples with limited RNA quantities. It contains gene-level counts.

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0045054

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Terms of use to access IMMUcan data v2.0

The applicant needs to agree with the Terms of use to access IMMUcan data through EGA.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002028 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000939785 fastq.gz 8.8 GB
EGAF50000939786 fastq.gz 10.1 GB
EGAF50000939787 fastq.gz 4.7 GB
EGAF50000939788 fastq.gz 5.6 GB
EGAF50000939789 fastq.gz 5.5 GB
EGAF50000939790 fastq.gz 2.7 GB
EGAF50000939791 fastq.gz 2.7 GB
EGAF50000939792 fastq.gz 4.9 GB
EGAF50000939793 fastq.gz 6.1 GB
EGAF50000939794 fastq.gz 4.7 GB
EGAF50000939795 fastq.gz 6.3 GB
EGAF50000939796 fastq.gz 5.9 GB
EGAF50000939797 fastq.gz 4.4 GB
EGAF50000939798 fastq.gz 12.0 GB
EGAF50000939799 fastq.gz 6.9 GB
EGAF50000939800 fastq.gz 4.7 GB
EGAF50000939801 fastq.gz 7.8 GB
EGAF50000939802 fastq.gz 7.0 GB
EGAF50000939803 fastq.gz 5.3 GB
EGAF50000939804 fastq.gz 4.1 GB
EGAF50000939805 fastq.gz 2.7 GB
EGAF50000939806 fastq.gz 2.4 GB
EGAF50000939807 fastq.gz 6.5 GB
EGAF50000939808 fastq.gz 3.6 GB
EGAF50000939809 fastq.gz 4.8 GB
EGAF50000939810 fastq.gz 8.4 GB
EGAF50000939811 fastq.gz 4.4 GB
EGAF50000939812 fastq.gz 4.7 GB
EGAF50000939813 fastq.gz 5.1 GB
EGAF50000939814 fastq.gz 3.1 GB
EGAF50000939815 fastq.gz 2.4 GB
EGAF50000939816 fastq.gz 3.7 GB
EGAF50000939817 fastq.gz 3.4 GB
EGAF50000939818 fastq.gz 4.9 GB
EGAF50000939819 fastq.gz 3.4 GB
EGAF50000939820 fastq.gz 5.6 GB
EGAF50000939821 fastq.gz 4.4 GB
EGAF50000939822 fastq.gz 4.5 GB
EGAF50000939823 fastq.gz 4.4 GB
EGAF50000939824 fastq.gz 3.9 GB
EGAF50000939825 fastq.gz 11.5 GB
EGAF50000939826 fastq.gz 6.5 GB
EGAF50000939827 fastq.gz 2.8 GB
EGAF50000939828 fastq.gz 6.7 GB
EGAF50000939829 fastq.gz 5.5 GB
EGAF50000939830 fastq.gz 5.3 GB
EGAF50000939831 fastq.gz 5.4 GB
EGAF50000939832 fastq.gz 4.6 GB
EGAF50000939833 fastq.gz 5.9 GB
EGAF50000939834 fastq.gz 3.4 GB
EGAF50000939835 fastq.gz 3.1 GB
EGAF50000939836 fastq.gz 5.4 GB
EGAF50000939837 fastq.gz 5.9 GB
EGAF50000939838 fastq.gz 7.7 GB
EGAF50000939839 fastq.gz 12.0 GB
EGAF50000939840 fastq.gz 6.6 GB
EGAF50000939841 fastq.gz 3.3 GB
EGAF50000939842 fastq.gz 2.3 GB
EGAF50000939843 fastq.gz 6.1 GB
EGAF50000939844 fastq.gz 4.9 GB
EGAF50000939845 fastq.gz 5.5 GB
EGAF50000939846 fastq.gz 5.7 GB
EGAF50000939847 fastq.gz 5.4 GB
EGAF50000939848 fastq.gz 2.2 GB
EGAF50000939849 fastq.gz 8.9 GB
EGAF50000939850 fastq.gz 6.4 GB
EGAF50000939851 fastq.gz 11.6 GB
EGAF50000939852 fastq.gz 9.2 GB
EGAF50000939853 fastq.gz 4.7 GB
EGAF50000939854 fastq.gz 4.9 GB
EGAF50000939855 fastq.gz 3.1 GB
EGAF50000939856 fastq.gz 5.4 GB
EGAF50000939857 fastq.gz 5.2 GB
EGAF50000939858 fastq.gz 5.1 GB
EGAF50000939859 fastq.gz 2.2 GB
EGAF50000939860 fastq.gz 5.3 GB
EGAF50000939861 fastq.gz 10.9 GB
EGAF50000939862 fastq.gz 3.2 GB
EGAF50000939863 fastq.gz 5.1 GB
EGAF50000939864 fastq.gz 3.2 GB
EGAF50000939865 fastq.gz 6.6 GB
EGAF50000939866 fastq.gz 3.7 GB
EGAF50000939867 fastq.gz 6.7 GB
EGAF50000939868 fastq.gz 11.2 GB
EGAF50000939869 fastq.gz 3.7 GB
EGAF50000939870 fastq.gz 7.9 GB
EGAF50000939871 fastq.gz 5.3 GB
EGAF50000939872 fastq.gz 7.1 GB
EGAF50000939873 fastq.gz 5.5 GB
EGAF50000939874 fastq.gz 5.3 GB
EGAF50000939875 fastq.gz 5.1 GB
EGAF50000939876 fastq.gz 7.4 GB
EGAF50000939877 fastq.gz 3.2 GB
EGAF50000939878 fastq.gz 4.8 GB
EGAF50000939879 fastq.gz 4.0 GB
EGAF50000939880 fastq.gz 6.2 GB
EGAF50000939881 fastq.gz 4.7 GB
EGAF50000939882 fastq.gz 6.3 GB
EGAF50000939883 fastq.gz 2.3 GB
EGAF50000939884 fastq.gz 5.5 GB
EGAF50000939885 fastq.gz 8.6 GB
EGAF50000939886 fastq.gz 8.9 GB
EGAF50000939887 fastq.gz 4.0 GB
EGAF50000939888 fastq.gz 4.5 GB
EGAF50000939889 fastq.gz 9.7 GB
EGAF50000939890 fastq.gz 5.3 GB
EGAF50000939891 fastq.gz 7.6 GB
EGAF50000939892 fastq.gz 11.5 GB
EGAF50000939893 fastq.gz 6.7 GB
EGAF50000939894 fastq.gz 7.6 GB
EGAF50000939895 fastq.gz 3.9 GB
EGAF50000939896 fastq.gz 2.4 GB
EGAF50000939897 fastq.gz 5.3 GB
EGAF50000939898 fastq.gz 7.2 GB
EGAF50000939899 fastq.gz 5.2 GB
EGAF50000939900 fastq.gz 4.9 GB
EGAF50000939901 fastq.gz 7.0 GB
EGAF50000939902 fastq.gz 11.6 GB
EGAF50000939903 fastq.gz 5.6 GB
EGAF50000939904 fastq.gz 4.9 GB
EGAF50000939905 fastq.gz 4.4 GB
EGAF50000939906 fastq.gz 6.3 GB
EGAF50000939907 fastq.gz 6.8 GB
EGAF50000939908 fastq.gz 3.9 GB
EGAF50000939909 fastq.gz 6.6 GB
EGAF50000939910 fastq.gz 6.1 GB
EGAF50000939911 fastq.gz 4.7 GB
EGAF50000939912 fastq.gz 6.3 GB
EGAF50000939913 fastq.gz 5.4 GB
EGAF50000939914 fastq.gz 3.8 GB
EGAF50000939915 fastq.gz 5.5 GB
EGAF50000939916 fastq.gz 6.3 GB
EGAF50000939917 fastq.gz 6.8 GB
EGAF50000939918 fastq.gz 2.2 GB
EGAF50000939919 fastq.gz 6.7 GB
EGAF50000939920 fastq.gz 4.2 GB
EGAF50000939921 fastq.gz 4.7 GB
EGAF50000939923 fastq.gz 5.3 GB
EGAF50000940329 txt 1.2 MB
EGAF50000940330 txt 1.2 MB
EGAF50000940331 txt 1.2 MB
EGAF50000940332 txt 1.2 MB
EGAF50000940333 txt 1.2 MB
EGAF50000940334 txt 1.2 MB
EGAF50000940335 txt 1.2 MB
EGAF50000940336 txt 1.2 MB
EGAF50000940337 txt 1.2 MB
EGAF50000940338 txt 1.2 MB
EGAF50000940339 txt 1.2 MB
EGAF50000940340 txt 1.2 MB
EGAF50000940341 txt 1.2 MB
EGAF50000940342 txt 1.2 MB
EGAF50000940343 txt 1.2 MB
EGAF50000940344 txt 1.2 MB
EGAF50000940345 txt 1.2 MB
EGAF50000940346 txt 1.2 MB
EGAF50000940347 txt 1.2 MB
EGAF50000940348 txt 1.2 MB
EGAF50000940349 txt 1.2 MB
EGAF50000940350 txt 1.2 MB
EGAF50000940351 txt 1.2 MB
EGAF50000940352 txt 1.2 MB
EGAF50000940353 txt 1.2 MB
EGAF50000940354 txt 1.2 MB
EGAF50000940355 txt 1.2 MB
EGAF50000940356 txt 1.2 MB
EGAF50000940357 txt 1.2 MB
EGAF50000940358 txt 1.2 MB
EGAF50000940359 txt 1.2 MB
EGAF50000940360 txt 1.2 MB
EGAF50000940361 txt 1.2 MB
EGAF50000940362 txt 1.2 MB
EGAF50000940363 txt 1.2 MB
EGAF50000940364 txt 1.2 MB
EGAF50000940365 txt 1.2 MB
EGAF50000940366 txt 1.2 MB
EGAF50000940367 txt 1.2 MB
EGAF50000940368 txt 1.2 MB
EGAF50000940369 txt 1.2 MB
EGAF50000940370 txt 1.2 MB
EGAF50000940371 txt 1.2 MB
EGAF50000940372 txt 1.2 MB
EGAF50000940373 txt 1.2 MB
EGAF50000940526 txt 1.2 MB
EGAF50000940529 txt 1.2 MB
EGAF50000940532 txt 1.2 MB
EGAF50000940535 txt 1.2 MB
EGAF50000940540 txt 1.2 MB
EGAF50000940543 txt 1.2 MB
EGAF50000940548 txt 1.2 MB
EGAF50000940551 txt 1.2 MB
EGAF50000940554 txt 1.2 MB
EGAF50000940557 txt 1.2 MB
EGAF50000940560 txt 1.2 MB
EGAF50000940563 txt 1.2 MB
EGAF50000940566 txt 1.2 MB
EGAF50000940569 txt 1.2 MB
EGAF50000940572 txt 1.2 MB
EGAF50000940575 txt 1.2 MB
EGAF50000940578 txt 1.2 MB
EGAF50000940583 txt 1.2 MB
EGAF50000940586 txt 1.2 MB
EGAF50000940591 txt 1.2 MB
EGAF50000940594 txt 1.2 MB
EGAF50000940597 txt 1.2 MB
EGAF50000940600 txt 1.2 MB
EGAF50000940601 txt 1.2 MB
207 Files (775.6 GB)