Plasma cell-free DNA sequencing across Illumina Element and Ultima-Genomics platforms
This dataset contains plasma cell-free DNA sequencing data from 48 platform-specific sample records generated for a ctDNA sequencing platform comparison study. The submitted files include paired-end FASTQ data for 16 Illumina samples, paired-end FASTQ data for 16 Element AVITI samples, and single-end FASTQ data for 16 Ultima Genomics samples. The data were generated to compare sequencing characteristics and downstream ctDNA analysis performance across Illumina, Element AVITI, and Ultima Genomics platforms.
- 28/08/2026
- 48 samples
- DAC: EGAC50000000907
- Technologies: Element AVITI, Illumina NovaSeq 6000, UG 100
- Archive: European Genome-phenome Archive (EGA)
DUO:0000027 version: 2021-02-23
project specific restriction
This data use modifier indicates that use is limited to use within an approved project.
WGS of cfDNA PDAC breast cancer and matched controls
Data requests are handled by the the legal department of Tel Aviv University. A data-transfer agreement will have to be signed in order for the data to be transferred.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000002029 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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| EGAF50000940614 | fastq.gz | 1.7 GB |
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| EGAF50000940615 | fastq.gz | 1.8 GB |
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| EGAF50000940616 | fastq.gz | 3.1 GB |
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| EGAF50000940617 | fastq.gz | 3.3 GB |
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| EGAF50000940618 | fastq.gz | 2.7 GB |
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| EGAF50000940619 | fastq.gz | 2.8 GB |
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| EGAF50000940620 | fastq.gz | 4.1 GB |
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| EGAF50000940621 | fastq.gz | 4.4 GB |
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| EGAF50000940622 | fastq.gz | 5.2 GB |
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| EGAF50000940623 | fastq.gz | 5.5 GB |
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| EGAF50000940624 | fastq.gz | 4.9 GB |
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| EGAF50000940625 | fastq.gz | 5.4 GB |
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| EGAF50000940626 | fastq.gz | 2.7 GB |
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| EGAF50000940627 | fastq.gz | 3.3 GB |
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| EGAF50000940628 | fastq.gz | 3.5 GB |
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| EGAF50000940629 | fastq.gz | 3.0 GB |
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| EGAF50000940630 | fastq.gz | 3.2 GB |
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| EGAF50000940631 | fastq.gz | 6.4 GB |
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| EGAF50000940632 | fastq.gz | 6.8 GB |
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| EGAF50000940633 | fastq.gz | 4.7 GB |
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| EGAF50000940634 | fastq.gz | 4.9 GB |
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| EGAF50000940635 | fastq.gz | 6.6 GB |
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| EGAF50000940636 | fastq.gz | 6.9 GB |
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| EGAF50000940637 | fastq.gz | 2.9 GB |
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| EGAF50000940638 | fastq.gz | 1.6 GB |
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| EGAF50000940639 | fastq.gz | 1.8 GB |
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| EGAF50000940640 | fastq.gz | 3.2 GB |
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| EGAF50000940641 | fastq.gz | 3.5 GB |
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| EGAF50000940642 | fastq.gz | 1.7 GB |
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| EGAF50000940643 | fastq.gz | 1.9 GB |
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| EGAF50000940644 | fastq.gz | 2.6 GB |
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| EGAF50000940645 | fastq.gz | 2.7 GB |
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| EGAF50000940646 | fastq.gz | 8.4 GB |
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| EGAF50000940647 | fastq.gz | 8.5 GB |
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| EGAF50000940648 | fastq.gz | 5.2 GB |
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| EGAF50000940649 | fastq.gz | 5.4 GB |
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| EGAF50000940650 | fastq.gz | 5.9 GB |
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| EGAF50000940651 | fastq.gz | 6.1 GB |
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| EGAF50000940652 | fastq.gz | 3.7 GB |
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| EGAF50000940653 | fastq.gz | 3.8 GB |
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| EGAF50000940654 | fastq.gz | 6.5 GB |
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| EGAF50000940655 | fastq.gz | 6.6 GB |
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| EGAF50000940656 | fastq.gz | 5.4 GB |
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| EGAF50000940657 | fastq.gz | 5.5 GB |
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| EGAF50000940658 | fastq.gz | 3.2 GB |
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| EGAF50000940659 | fastq.gz | 11.2 GB |
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| EGAF50000940660 | fastq.gz | 11.5 GB |
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| EGAF50000940661 | fastq.gz | 5.6 GB |
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| EGAF50000940662 | fastq.gz | 5.8 GB |
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| EGAF50000940663 | fastq.gz | 9.1 GB |
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| EGAF50000940664 | fastq.gz | 9.3 GB |
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| EGAF50000940665 | fastq.gz | 4.5 GB |
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| EGAF50000940666 | fastq.gz | 4.6 GB |
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| EGAF50000940667 | fastq.gz | 13.2 GB |
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| EGAF50000940668 | fastq.gz | 13.5 GB |
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| EGAF50000940669 | fastq.gz | 3.3 GB |
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| EGAF50000940670 | fastq.gz | 11.5 GB |
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| EGAF50000940671 | fastq.gz | 11.6 GB |
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| EGAF50000940672 | fastq.gz | 11.6 GB |
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| EGAF50000940673 | fastq.gz | 11.9 GB |
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| EGAF50000940674 | fastq.gz | 3.4 GB |
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| EGAF50000940675 | fastq.gz | 3.5 GB |
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| EGAF50000940676 | fastq.gz | 9.8 GB |
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| EGAF50000940677 | fastq.gz | 10.1 GB |
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| EGAF50000940678 | fastq.gz | 2.3 GB |
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| EGAF50000940679 | fastq.gz | 1.3 GB |
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| EGAF50000940680 | fastq.gz | 3.0 GB |
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| EGAF50000940681 | fastq.gz | 1.2 GB |
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| EGAF50000940682 | fastq.gz | 3.5 GB |
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| EGAF50000940683 | fastq.gz | 1.7 GB |
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| EGAF50000940684 | fastq.gz | 1.8 GB |
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| EGAF50000940685 | fastq.gz | 1.4 GB |
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| EGAF50000940686 | fastq.gz | 1.9 GB |
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| EGAF50000940687 | fastq.gz | 1.6 GB |
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| EGAF50000940688 | fastq.gz | 3.4 GB |
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| EGAF50000940689 | fastq.gz | 1.7 GB |
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| EGAF50000940690 | fastq.gz | 2.7 GB |
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| EGAF50000940691 | fastq.gz | 1.5 GB |
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| EGAF50000940692 | fastq.gz | 3.7 GB |
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| EGAF50000940693 | fastq.gz | 1.9 GB |
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| 80 Files (392.6 GB) | ||||