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Processed Gene-Level Expression Counts from 137 Bladder Cancer QuantSeq 3′ RNA-seq Samples

This controlled-access dataset contains processed gene-level expression counts generated from 137 bladder cancer tumor samples collected from 112 patients. Gene expression quantification was performed using the nf-core/rnaseq workflow with Salmon, and transcript-level abundance estimates were aggregated to gene-level counts. Access is governed by the Bladder Cancer Genomics Data Access Committee (DAC) and the associated controlled-access policy.

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DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0004992 MONDO:0001187

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000046
version: 2021-02-23

non-commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit use.

Controlled Access Policy for Bladder Cancer Genomic and Clinical Data – Erlangen–Bonn Collaboration

This policy governs access to controlled-access human genomic and associated clinical datasets generated through the collaborative bladder cancer research program between Universitätsklinikum Erlangen and Universitätsklinikum Bonn, and deposited in the European Genome-phenome Archive (EGA). Access to these datasets is strictly controlled and is not granted automatically. Data access requests are considered only from qualified researchers conducting scientifically and ethically justified research that is consistent with the informed consent provided by study participants, applicable ethical approvals, and relevant legal and regulatory requirements. Each application is reviewed individually by the Bladder Cancer Genomics Data Access Committee (DAC). Applicants must provide a detailed description of the proposed research project, the intended use of the requested data, the investigators involved, institutional affiliation, funding source where applicable, and any required ethical or regulatory approvals. The DAC may request additional information or clarification before reaching a decision. Access is granted solely to the approved investigators for the specific research project authorized by the DAC. Any new research purpose, extension of the approved project, addition of new investigators, or request for additional datasets requires submission of a new or amended application for DAC review and approval. Redistribution, transfer, sharing, or disclosure of the data to any third party is strictly prohibited without prior written authorization from the DAC. Approved users are responsible for implementing appropriate technical and organizational safeguards to protect participant confidentiality and for complying with all applicable legal, ethical, institutional, and data protection requirements. Commercial use of the data, including research and development conducted by or on behalf of commercial entities, is not permitted unless explicitly approved by the DAC and demonstrably consistent with the participants' informed consent, applicable ethical approvals, and institutional policies. The DAC reserves the right to approve, request modifications to, or decline any application that is considered incompatible with participant consent, ethical approvals, institutional policies, applicable data protection regulations, or the objectives of the proposed research.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002032 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000940926 tsv 27.4 MB
1 File (27.4 MB)