About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Bellini PBMCs scRNA-seq

Baseline (n=16) and Post-treatment (n=6) PBMCs from TNBC Bellini patients treated with anti-PD1 monotherapy subjected to single-cell RNA-sequencing. Samples were pooled into 6 batches and label-free, bioinformatically separated using Souporcell.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002067 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000954424 fastq.gz 13.8 GB
EGAF50000954425 fastq.gz 6.2 GB
EGAF50000954426 fastq.gz 16.1 GB
EGAF50000954427 fastq.gz 7.2 GB
EGAF50000954428 fastq.gz 13.5 GB
EGAF50000954429 fastq.gz 6.1 GB
EGAF50000954436 fastq.gz 13.5 GB
EGAF50000954437 fastq.gz 6.1 GB
EGAF50000954438 fastq.gz 6.4 GB
EGAF50000954439 fastq.gz 14.2 GB
EGAF50000954440 fastq.gz 16.5 GB
EGAF50000954441 fastq.gz 7.4 GB
EGAF50000954444 csv 12.5 MB
13 Files (127.1 GB)