About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Nanopore Amplicon Sequencing of 34 uveal melanoma samples (33 patient tumors + 1 primary cell line) in 4 mutational hotspot regions for genotyping

Sequencing of one mutational hotspot region in each of the genes GNA11, GNAQ, SF3B1 and SRSF2. 33 patient tumor samples and a primary cell line were analyzed, all uveal melanoma. Amplicons were generated in a PCR step followed by AMPure XP clean up. Amplicons were pooled equally per sample and sequenced for genotyping.

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Data Access Policy – Institutional Use and Access Committee

Access to the deposited data is controlled by the institutional Use & Access Committee (UAC). Access may be granted to researchers affiliated with recognized research institutions who have the appropriate ethical and regulatory approvals required for the proposed research. Requests for access are evaluated on an individual basis by the UAC. The assessment takes into consideration, among other factors, the scientific purpose and intended use of the data, the requested datasets, the applicant's institutional affiliation and relevant ethical approvals, and the proposed measures for data security, storage, and handling. Access will only be granted where the proposed use is consistent with the consent and ethical framework under which the data were generated and deposited. Researchers granted access must comply with all applicable institutional, ethical, legal, and data protection requirements and must use and store the data in accordance with the conditions specified by the UAC.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002137 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000983688 fastq.gz 138.5 MB
EGAF50000983689 fastq.gz 71.4 MB
EGAF50000983690 fastq.gz 93.9 MB
EGAF50000983691 fastq.gz 107.4 MB
EGAF50000983692 fastq.gz 391.4 MB
EGAF50000983693 fastq.gz 88.3 MB
EGAF50000983694 fastq.gz 106.4 MB
EGAF50000983695 fastq.gz 68.3 MB
EGAF50000983696 fastq.gz 122.7 MB
EGAF50000983697 fastq.gz 71.5 MB
EGAF50000983698 fastq.gz 42.3 MB
EGAF50000983699 fastq.gz 181.0 MB
EGAF50000983700 fastq.gz 178.2 MB
EGAF50000983701 fastq.gz 199.8 MB
EGAF50000983702 fastq.gz 177.9 MB
EGAF50000983703 fastq.gz 172.8 MB
EGAF50000983704 fastq.gz 90.8 MB
EGAF50000983705 fastq.gz 68.1 MB
EGAF50000983706 fastq.gz 250.4 MB
EGAF50000983707 fastq.gz 108.7 MB
EGAF50000983708 fastq.gz 83.7 MB
EGAF50000983709 fastq.gz 41.7 MB
EGAF50000983710 fastq.gz 42.5 MB
EGAF50000983711 fastq.gz 46.6 MB
EGAF50000983712 fastq.gz 64.0 MB
EGAF50000983713 fastq.gz 286.6 MB
EGAF50000983714 fastq.gz 65.5 MB
EGAF50000983715 fastq.gz 25.2 MB
EGAF50000983716 fastq.gz 42.6 MB
EGAF50000983717 fastq.gz 65.8 MB
EGAF50000983718 fastq.gz 42.0 MB
EGAF50000983719 fastq.gz 108.7 MB
EGAF50000983720 fastq.gz 82.5 MB
EGAF50000983721 fastq.gz 58.7 MB
34 Files (3.8 GB)