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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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transcriptomics for IMMU-SCCHN2 cohort

The goal of IMMUcan is to improve our understanding of the interactions between the immune system and tumors, and to investigate how therapeutic interventions modulate these interactions. This cohort comprises patients with head and neck squamous cell carcinoma (HNSCC) who experienced disease progression following curative chemoradiotherapy and subsequently underwent salvage surgery. The dataset contains transcriptomic data from 15 tumor samples, processed using the STAR RNA-seq analysis pipeline. Two library preparation protocols were employed: Roche KAPA for high-quality RNA samples and Takara SMART-Seq Stranded for samples with limited RNA input. The dataset provides gene-level expression counts for downstream analyses.

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DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0045054

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Terms of use to access IMMUcan data v2.0

The applicant needs to agree with the Terms of use to access IMMUcan data through EGA.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002147 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000984909 txt 1.2 MB
EGAF50000984910 txt 1.2 MB
EGAF50000984911 txt 1.2 MB
EGAF50000984912 txt 1.2 MB
EGAF50000984913 txt 1.2 MB
EGAF50000984914 txt 1.2 MB
EGAF50000984915 txt 1.2 MB
EGAF50000984916 txt 1.2 MB
EGAF50000984917 txt 1.2 MB
EGAF50000984918 txt 1.2 MB
EGAF50000984919 txt 1.2 MB
EGAF50000984920 txt 1.2 MB
EGAF50000984921 txt 1.2 MB
EGAF50000984922 txt 1.2 MB
EGAF50000984923 txt 1.2 MB
EGAF50000984973 fastq.gz 12.3 GB
EGAF50000984975 fastq.gz 10.3 GB
EGAF50000984976 fastq.gz 11.8 GB
EGAF50000984977 fastq.gz 2.8 GB
EGAF50000984978 fastq.gz 2.8 GB
EGAF50000984979 fastq.gz 9.2 GB
EGAF50000984980 fastq.gz 3.3 GB
EGAF50000984981 fastq.gz 5.4 GB
EGAF50000984982 fastq.gz 10.6 GB
EGAF50000984983 fastq.gz 5.9 GB
EGAF50000984984 fastq.gz 7.5 GB
EGAF50000984985 fastq.gz 12.0 GB
EGAF50000984986 fastq.gz 12.2 GB
EGAF50000984987 fastq.gz 4.8 GB
EGAF50000984988 fastq.gz 11.0 GB
EGAF50000984989 fastq.gz 2.8 GB
EGAF50000984990 fastq.gz 11.7 GB
EGAF50000984991 fastq.gz 2.8 GB
EGAF50000984992 fastq.gz 6.1 GB
EGAF50000984993 fastq.gz 5.5 GB
EGAF50000984994 fastq.gz 5.0 GB
EGAF50000984995 fastq.gz 4.6 GB
EGAF50000984996 fastq.gz 9.7 GB
EGAF50000984997 fastq.gz 5.1 GB
EGAF50000984998 fastq.gz 9.4 GB
EGAF50000984999 fastq.gz 11.9 GB
EGAF50000985000 fastq.gz 3.3 GB
EGAF50000985001 fastq.gz 7.7 GB
EGAF50000985002 fastq.gz 9.7 GB
EGAF50000985003 fastq.gz 10.2 GB
45 Files (227.5 GB)