About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Variant calling for CRCL-CRC1 cohort

The goal of IMMUcan is to understand how the immune system interacts with tumors and how therapeutic interventions influence this interaction. This cohort includes patients with early-stage colorectal adenocarcinoma. This dataset contains whole exome sequencing data from tumor and matching germline samples processed with the Vegan pipeline. It includes SNP and CNV calling.

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0045054

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Terms of use to access IMMUcan data v2.0

The applicant needs to agree with the Terms of use to access IMMUcan data through EGA.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002164 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50001035504 fastq.gz 4.2 GB
EGAF50001035505 fastq.gz 4.3 GB
EGAF50001035510 fastq.gz 5.6 GB
EGAF50001035511 fastq.gz 5.9 GB
EGAF50001035512 fastq.gz 3.6 GB
EGAF50001035513 fastq.gz 3.6 GB
EGAF50001035514 fastq.gz 4.8 GB
EGAF50001035515 fastq.gz 4.7 GB
EGAF50001035516 fastq.gz 3.6 GB
EGAF50001035517 fastq.gz 3.7 GB
EGAF50001035520 fastq.gz 4.8 GB
EGAF50001035521 fastq.gz 4.7 GB
EGAF50001035522 fastq.gz 3.4 GB
EGAF50001035523 fastq.gz 3.4 GB
EGAF50001035524 fastq.gz 4.8 GB
EGAF50001035525 fastq.gz 4.7 GB
EGAF50001035526 fastq.gz 2.8 GB
EGAF50001035527 fastq.gz 2.9 GB
EGAF50001035528 fastq.gz 3.1 GB
EGAF50001035529 fastq.gz 3.2 GB
EGAF50001035534 fastq.gz 2.7 GB
EGAF50001035535 fastq.gz 2.7 GB
EGAF50001035540 fastq.gz 6.5 GB
EGAF50001035541 fastq.gz 6.0 GB
EGAF50001035542 fastq.gz 4.5 GB
EGAF50001035543 fastq.gz 4.4 GB
EGAF50001035546 fastq.gz 5.7 GB
EGAF50001035547 fastq.gz 5.5 GB
EGAF50001035548 fastq.gz 5.6 GB
EGAF50001035549 fastq.gz 5.4 GB
EGAF50001035550 fastq.gz 2.9 GB
EGAF50001035551 fastq.gz 3.0 GB
EGAF50001035552 fastq.gz 4.9 GB
EGAF50001035553 fastq.gz 4.9 GB
EGAF50001035554 fastq.gz 6.5 GB
EGAF50001035555 fastq.gz 6.7 GB
EGAF50001035556 fastq.gz 3.1 GB
EGAF50001035557 fastq.gz 3.1 GB
EGAF50001035560 fastq.gz 3.7 GB
EGAF50001035561 fastq.gz 3.7 GB
EGAF50001035562 fastq.gz 2.9 GB
EGAF50001035563 fastq.gz 2.9 GB
EGAF50001035564 fastq.gz 5.8 GB
EGAF50001035565 fastq.gz 6.1 GB
EGAF50001035566 fastq.gz 3.6 GB
EGAF50001035567 fastq.gz 3.7 GB
EGAF50001035568 fastq.gz 3.3 GB
EGAF50001035569 fastq.gz 3.3 GB
EGAF50001035570 fastq.gz 6.7 GB
EGAF50001035571 fastq.gz 6.4 GB
EGAF50001035572 fastq.gz 3.1 GB
EGAF50001035573 fastq.gz 3.1 GB
EGAF50001035574 fastq.gz 3.6 GB
EGAF50001035575 fastq.gz 3.7 GB
EGAF50001035576 fastq.gz 3.4 GB
EGAF50001035577 fastq.gz 3.4 GB
EGAF50001035578 fastq.gz 3.2 GB
EGAF50001035579 fastq.gz 3.2 GB
EGAF50001035582 fastq.gz 5.9 GB
EGAF50001035583 fastq.gz 5.8 GB
EGAF50001035586 fastq.gz 4.4 GB
EGAF50001035587 fastq.gz 4.3 GB
EGAF50001035592 fastq.gz 5.2 GB
EGAF50001035593 fastq.gz 5.6 GB
EGAF50001035594 fastq.gz 2.7 GB
EGAF50001035595 fastq.gz 2.7 GB
EGAF50001035596 fastq.gz 4.2 GB
EGAF50001035597 fastq.gz 4.2 GB
EGAF50001035604 fastq.gz 5.5 GB
EGAF50001035605 fastq.gz 5.4 GB
EGAF50001035606 fastq.gz 3.3 GB
EGAF50001035607 fastq.gz 3.3 GB
EGAF50001035612 fastq.gz 5.8 GB
EGAF50001035613 fastq.gz 6.0 GB
EGAF50001035618 fastq.gz 5.2 GB
EGAF50001035619 fastq.gz 5.1 GB
EGAF50001035620 fastq.gz 3.1 GB
EGAF50001035621 fastq.gz 3.1 GB
EGAF50001035622 fastq.gz 5.2 GB
EGAF50001035623 fastq.gz 5.3 GB
EGAF50001035624 vcf.gz 3.2 kB
EGAF50001035625 vcf.gz 35.1 kB
EGAF50001035628 vcf.gz 2.4 kB
EGAF50001035629 vcf.gz 759.4 kB
EGAF50001035630 vcf.gz 5.0 kB
EGAF50001035631 vcf.gz 50.7 kB
EGAF50001035632 vcf.gz 4.4 kB
EGAF50001035633 vcf.gz 60.6 kB
EGAF50001035634 vcf.gz 61.7 kB
EGAF50001035635 vcf.gz 3.0 kB
EGAF50001035640 vcf.gz 2.1 kB
EGAF50001035641 vcf.gz 600.9 kB
EGAF50001035642 vcf.gz 2.5 kB
EGAF50001035643 vcf.gz 446.5 kB
EGAF50001035648 vcf.gz 76.5 kB
EGAF50001035649 vcf.gz 5.1 kB
EGAF50001035650 vcf.gz 4.3 kB
EGAF50001035651 vcf.gz 27.4 kB
EGAF50001035652 vcf.gz 2.7 kB
EGAF50001035653 vcf.gz 673.6 kB
EGAF50001035658 vcf.gz 3.0 kB
EGAF50001035659 vcf.gz 637.7 kB
EGAF50001035660 vcf.gz 2.2 kB
EGAF50001035661 vcf.gz 831.7 kB
EGAF50001035662 vcf.gz 2.8 kB
EGAF50001035663 vcf.gz 299.2 kB
EGAF50001035664 vcf.gz 2.5 kB
EGAF50001035665 vcf.gz 405.1 kB
EGAF50001035666 vcf.gz 3.0 kB
EGAF50001035667 vcf.gz 42.7 kB
EGAF50001035670 vcf.gz 4.0 kB
EGAF50001035671 vcf.gz 47.8 kB
EGAF50001035674 vcf.gz 2.3 kB
EGAF50001035675 vcf.gz 453.8 kB
EGAF50001035677 vcf.gz 3.7 kB
EGAF50001035678 vcf.gz 59.1 kB
EGAF50001035680 vcf.gz 4.0 kB
EGAF50001035681 vcf.gz 48.3 kB
EGAF50001035682 vcf.gz 2.9 kB
EGAF50001035683 vcf.gz 39.4 kB
120 Files (346.5 GB)