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Transcriptomic Dataset of avelumab and immune-stimulating agent combination study

This dataset includes transcriptomic data of avelumab and immune-stimulating agent combination study. Bulk RNA-seq data was generated from 44 patients (110 samples) at different timepoints (baseline, C1D1, C1D15, EOT) of advanced solid tumors (cholangiocarcinoma, pancreatic, ovarian, cervical, colorectal, endometrial). Data is generated using Illumina Novaseq 6000 instrument. Analyses include bam files that are mapped to hg19 (GRCH37).

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DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

Policy protocol for DAC of UT MD Anderson Cancer Center for Genomic and transcriptomics data of avelumab

DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”), effective as of the day of , 20 (“Effective Date”), is by and between The University of Texas M. D. Anderson Cancer Center, an institution of The University of Texas System and an agency of the State of Texas, with an address at 1515 Holcombe Boulevard, Houston, Texas 77030 (“Provider”), and (“Recipient”) on behalf of its investigator (“Recipient Investigator”) (collectively, the “Parties”; each, a “Party”). RECITALS Provider maintains the following de-identified data in the European Genome-phenome Archive (EGA) managed by the European Bioinformatics Institute (“Data”), and Provider is willing to allow Recipient to access such Data from the EGA for the internal noncommercial research purposes of (“Purpose”), pursuant to the terms of this Agreement. In consideration of the mutual promises and covenants herein, and for other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, the Parties agree as follows: 1. The Data will be used solely for the Research by Recipient Investigator at Recipient, and may not be transferred to any other investigator or to any third party without prior written permission from Provider. The Material may not be used for any purpose other than the Research, including without limitation for any commercial purpose or for research in human subjects (including, without limitation, in diagnostic testing). 2. Neither Recipient nor Recipient Investigator shall disclose Data to any person or party other than the Recipient Investigator hereunder without Provider’s prior written consent. 3. The Data will be used in compliance with all applicable laws, regulations, and guidelines applicable to the Data, including without limitation any applicable export controls. 4. In any publication resulting from use of the Data, Recipient and Recipient Investigator shall acknowledge Department of Bioinformatics and Computational Biology (“Provider Investigator”) and Provider as the provider of the Data. 5. This Agreement shall be effective as of the Effective Date and shall remain effective until completion of the Research. Either Party may terminate this Agreement with or without cause upon thirty (30) days’ written notice to the other Party. Upon expiration or termination of this Agreement for any reason, Recipient shall destroy all Data received pursuant to this Agreement. 6. Any notice permitted or required as provided for herein shall be in writing and to the contact and address as noted below or as may be provided by either party to the other in writing from time to time. Notice to Provider shall be to: Chief Legal Officer The University of Texas M. D. Anderson Cancer Center 7007 Bertner Ave., 1MC11.3433, Suite 1674 Houston, Texas 77030 Phone: 713-745-6633; Facsimile: 713-745-6029 With a copy to: The University of Texas M. D. Anderson Cancer Center 1515 Holcombe Blvd., FCT 8.5025 Office of Research Administration Attn: Executive Director, Research Administration Houston, TX 77030 Phone: 713-792-3672; Facsimile: 713-792-7455 Notice to Recipient shall be to: [insert] 7. In the event Protected Health Information (“PHI”), as defined by the federal Health Insurance Portability and Accountability Act of 1996 (“HIPAA”), as amended, is inadvertently created, accessed by, and/or disclosed to Recipient in connection with this Agreement, Recipient will immediately notify the Provider and will return to Provider or destroy such PHI, in accordance with the Provider’s instructions. Pending return or destruction of any PHI, Recipient shall maintain the confidentiality of all Data (including the PHI) and use appropriate safeguards to prevent access to, use, or disclosure of Data (including the PHI). 8. PROVIDER MAKES NO REPRESENTATION OR WARRANTY CONCERNING THE MATERIAL, INCLUDING WITHOUT LIMITATION, WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. 9. Recipient Investigator and Recipient accept all liability for any use of the Data and for any loss, claim, or damage which may arise from or in connection with this Agreement or the use, handling or storage of the Data and in no event shall Provider or Provider Investigator be liable for any such use, loss, claim or damage. [Insert Recipient Name Here] THE UNIVERSITY OF TEXAS M. D. ANDERSON CANCER CENTER By: By: Name: Name: Title: Title: Date: Date: Read and Understood: Recipient Scientist: Provider Scientist: [Insert Name and Title Here] [Insert Name and Title Here] Date: Date: 2

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002174 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50001042932 bam 6.0 GB
EGAF50001042933 bam 3.3 GB
EGAF50001042934 bam 3.7 GB
EGAF50001042935 bam 6.7 GB
EGAF50001042936 bam 2.3 GB
EGAF50001042937 bam 3.4 GB
EGAF50001042938 bam 5.8 GB
EGAF50001042939 bam 6.6 GB
EGAF50001042940 bam 4.2 GB
EGAF50001042941 bam 5.4 GB
EGAF50001042942 bam 4.6 GB
EGAF50001042943 bam 3.9 GB
EGAF50001042944 bam 6.4 GB
EGAF50001042959 bam 4.0 GB
EGAF50001042960 bam 3.4 GB
EGAF50001042961 bam 3.1 GB
EGAF50001042962 bam 3.9 GB
EGAF50001042963 bam 4.9 GB
EGAF50001042965 bam 5.9 GB
EGAF50001042966 bam 4.3 GB
EGAF50001042967 bam 3.4 GB
EGAF50001042968 bam 6.8 GB
EGAF50001042969 bam 4.3 GB
EGAF50001042970 bam 7.1 GB
EGAF50001042971 bam 6.7 GB
EGAF50001042972 bam 5.5 GB
EGAF50001042974 bam 2.5 GB
EGAF50001042975 bam 6.8 GB
EGAF50001042976 bam 4.2 GB
EGAF50001042977 bam 5.0 GB
EGAF50001042978 bam 5.8 GB
EGAF50001042979 bam 3.4 GB
EGAF50001042980 bam 4.3 GB
EGAF50001042981 bam 3.6 GB
EGAF50001042982 bam 3.7 GB
EGAF50001042983 bam 8.6 GB
EGAF50001042984 bam 3.9 GB
EGAF50001042985 bam 4.3 GB
EGAF50001042986 bam 4.6 GB
EGAF50001042987 bam 7.8 GB
EGAF50001042988 bam 2.3 GB
EGAF50001042989 bam 4.5 GB
EGAF50001042990 bam 3.8 GB
EGAF50001042991 bam 3.8 GB
EGAF50001042992 bam 3.4 GB
EGAF50001042993 bam 3.9 GB
EGAF50001042994 bam 4.0 GB
EGAF50001042995 bam 4.1 GB
EGAF50001042996 bam 3.8 GB
EGAF50001042997 bam 3.4 GB
EGAF50001042998 bam 4.1 GB
EGAF50001042999 bam 4.9 GB
EGAF50001043000 bam 4.6 GB
EGAF50001043001 bam 3.9 GB
EGAF50001043002 bam 3.1 GB
EGAF50001043003 bam 4.0 GB
EGAF50001043004 bam 8.5 GB
EGAF50001043005 bam 7.1 GB
EGAF50001043006 bam 3.9 GB
EGAF50001043007 bam 3.3 GB
EGAF50001043008 bam 5.0 GB
EGAF50001043009 bam 3.8 GB
EGAF50001043010 bam 2.6 GB
EGAF50001043011 bam 7.2 GB
EGAF50001043012 bam 5.6 GB
EGAF50001043013 bam 7.1 GB
EGAF50001043014 bam 3.3 GB
EGAF50001043019 bam 4.4 GB
EGAF50001043020 bam 6.0 GB
EGAF50001043021 bam 3.2 GB
EGAF50001043022 bam 5.9 GB
EGAF50001043023 bam 2.5 GB
EGAF50001043024 bam 2.2 GB
EGAF50001043025 bam 3.9 GB
EGAF50001043026 bam 3.8 GB
EGAF50001043027 bam 5.0 GB
EGAF50001043028 bam 3.4 GB
EGAF50001043029 bam 4.9 GB
EGAF50001043030 bam 3.5 GB
EGAF50001043035 bam 6.8 GB
EGAF50001043036 bam 3.9 GB
EGAF50001043037 bam 5.2 GB
EGAF50001043038 bam 3.6 GB
EGAF50001043039 bam 5.0 GB
EGAF50001043040 bam 4.0 GB
EGAF50001043041 bam 3.9 GB
EGAF50001043046 bam 1.5 GB
EGAF50001043047 bam 3.4 GB
EGAF50001043048 bam 1.8 GB
EGAF50001043049 bam 2.5 GB
EGAF50001043050 bam 4.8 GB
EGAF50001043051 bam 2.2 GB
EGAF50001043052 bam 3.0 GB
EGAF50001043053 bam 3.3 GB
EGAF50001043054 bam 2.6 GB
EGAF50001043055 bam 2.2 GB
EGAF50001043056 bam 3.9 GB
EGAF50001043057 bam 2.6 GB
EGAF50001043058 bam 4.4 GB
EGAF50001043059 bam 4.2 GB
EGAF50001043060 bam 4.2 GB
EGAF50001043061 bam 5.1 GB
EGAF50001043062 bam 3.3 GB
EGAF50001043063 bam 3.3 GB
EGAF50001043064 bam 3.6 GB
EGAF50001043065 bam 4.3 GB
EGAF50001043066 bam 4.7 GB
EGAF50001043067 bam 4.1 GB
EGAF50001043086 bam 3.6 GB
EGAF50001043087 bam 3.0 GB
110 Files (476.2 GB)