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Genomic Datasets of avelumab and immune-stimulating agents combination study

This dataset includes genomic data of avelumab and immune-stimulating agent combination study. Whole exome sequencing data was generated from 46 patients (156 samples) at different timepoints ((baseline, C1D1, C1D15, EOT, PBMC)) of advanced solid tumors (cholangiocarcinoma, pancreatic, ovarian, cervical, colorectal, endometrial). Data is generated using Illumina Novaseq 6000 instrument. Analyses include bam files that are mapped to hg19 (GRCH37).

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DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

Policy protocol for DAC of UT MD Anderson Cancer Center for Genomic and transcriptomics data of avelumab

DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”), effective as of the day of , 20 (“Effective Date”), is by and between The University of Texas M. D. Anderson Cancer Center, an institution of The University of Texas System and an agency of the State of Texas, with an address at 1515 Holcombe Boulevard, Houston, Texas 77030 (“Provider”), and (“Recipient”) on behalf of its investigator (“Recipient Investigator”) (collectively, the “Parties”; each, a “Party”). RECITALS Provider maintains the following de-identified data in the European Genome-phenome Archive (EGA) managed by the European Bioinformatics Institute (“Data”), and Provider is willing to allow Recipient to access such Data from the EGA for the internal noncommercial research purposes of (“Purpose”), pursuant to the terms of this Agreement. In consideration of the mutual promises and covenants herein, and for other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, the Parties agree as follows: 1. The Data will be used solely for the Research by Recipient Investigator at Recipient, and may not be transferred to any other investigator or to any third party without prior written permission from Provider. The Material may not be used for any purpose other than the Research, including without limitation for any commercial purpose or for research in human subjects (including, without limitation, in diagnostic testing). 2. Neither Recipient nor Recipient Investigator shall disclose Data to any person or party other than the Recipient Investigator hereunder without Provider’s prior written consent. 3. The Data will be used in compliance with all applicable laws, regulations, and guidelines applicable to the Data, including without limitation any applicable export controls. 4. In any publication resulting from use of the Data, Recipient and Recipient Investigator shall acknowledge Department of Bioinformatics and Computational Biology (“Provider Investigator”) and Provider as the provider of the Data. 5. This Agreement shall be effective as of the Effective Date and shall remain effective until completion of the Research. Either Party may terminate this Agreement with or without cause upon thirty (30) days’ written notice to the other Party. Upon expiration or termination of this Agreement for any reason, Recipient shall destroy all Data received pursuant to this Agreement. 6. Any notice permitted or required as provided for herein shall be in writing and to the contact and address as noted below or as may be provided by either party to the other in writing from time to time. Notice to Provider shall be to: Chief Legal Officer The University of Texas M. D. Anderson Cancer Center 7007 Bertner Ave., 1MC11.3433, Suite 1674 Houston, Texas 77030 Phone: 713-745-6633; Facsimile: 713-745-6029 With a copy to: The University of Texas M. D. Anderson Cancer Center 1515 Holcombe Blvd., FCT 8.5025 Office of Research Administration Attn: Executive Director, Research Administration Houston, TX 77030 Phone: 713-792-3672; Facsimile: 713-792-7455 Notice to Recipient shall be to: [insert] 7. In the event Protected Health Information (“PHI”), as defined by the federal Health Insurance Portability and Accountability Act of 1996 (“HIPAA”), as amended, is inadvertently created, accessed by, and/or disclosed to Recipient in connection with this Agreement, Recipient will immediately notify the Provider and will return to Provider or destroy such PHI, in accordance with the Provider’s instructions. Pending return or destruction of any PHI, Recipient shall maintain the confidentiality of all Data (including the PHI) and use appropriate safeguards to prevent access to, use, or disclosure of Data (including the PHI). 8. PROVIDER MAKES NO REPRESENTATION OR WARRANTY CONCERNING THE MATERIAL, INCLUDING WITHOUT LIMITATION, WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. 9. Recipient Investigator and Recipient accept all liability for any use of the Data and for any loss, claim, or damage which may arise from or in connection with this Agreement or the use, handling or storage of the Data and in no event shall Provider or Provider Investigator be liable for any such use, loss, claim or damage. [Insert Recipient Name Here] THE UNIVERSITY OF TEXAS M. D. ANDERSON CANCER CENTER By: By: Name: Name: Title: Title: Date: Date: Read and Understood: Recipient Scientist: Provider Scientist: [Insert Name and Title Here] [Insert Name and Title Here] Date: Date: 2

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002175 Exome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50001042824 bam 31.4 GB
EGAF50001042825 bam 35.4 GB
EGAF50001042826 bam 30.3 GB
EGAF50001042827 bam 29.4 GB
EGAF50001042828 bam 35.3 GB
EGAF50001042829 bam 31.9 GB
EGAF50001042830 bam 32.1 GB
EGAF50001042831 bam 30.5 GB
EGAF50001042832 bam 31.9 GB
EGAF50001042833 bam 23.0 GB
EGAF50001042834 bam 35.5 GB
EGAF50001042835 bam 25.4 GB
EGAF50001042836 bam 23.9 GB
EGAF50001042837 bam 31.4 GB
EGAF50001042838 bam 37.7 GB
EGAF50001042839 bam 31.4 GB
EGAF50001042840 bam 33.0 GB
EGAF50001042841 bam 32.3 GB
EGAF50001042842 bam 19.0 GB
EGAF50001042843 bam 20.5 GB
EGAF50001042844 bam 28.4 GB
EGAF50001042845 bam 33.6 GB
EGAF50001042846 bam 21.1 GB
EGAF50001042847 bam 25.6 GB
EGAF50001042848 bam 25.5 GB
EGAF50001042849 bam 22.3 GB
EGAF50001042850 bam 24.5 GB
EGAF50001042851 bam 33.0 GB
EGAF50001042852 bam 20.6 GB
EGAF50001042853 bam 25.7 GB
EGAF50001042854 bam 33.4 GB
EGAF50001042855 bam 31.2 GB
EGAF50001042856 bam 31.3 GB
EGAF50001042857 bam 36.1 GB
EGAF50001042858 bam 22.6 GB
EGAF50001042859 bam 33.4 GB
EGAF50001042860 bam 31.1 GB
EGAF50001042861 bam 31.2 GB
EGAF50001042862 bam 32.7 GB
EGAF50001042863 bam 43.2 GB
EGAF50001042864 bam 36.4 GB
EGAF50001042865 bam 29.0 GB
EGAF50001042866 bam 30.4 GB
EGAF50001042867 bam 30.4 GB
EGAF50001042868 bam 29.4 GB
EGAF50001042869 bam 23.2 GB
EGAF50001042870 bam 20.0 GB
EGAF50001042871 bam 21.1 GB
EGAF50001042872 bam 21.1 GB
EGAF50001042873 bam 21.2 GB
EGAF50001042874 bam 25.1 GB
EGAF50001042875 bam 23.5 GB
EGAF50001042876 bam 27.2 GB
EGAF50001042877 bam 22.5 GB
EGAF50001042878 bam 25.6 GB
EGAF50001042879 bam 20.8 GB
EGAF50001042880 bam 21.4 GB
EGAF50001042881 bam 20.0 GB
EGAF50001042882 bam 20.4 GB
EGAF50001042883 bam 21.0 GB
EGAF50001042884 bam 19.4 GB
EGAF50001042885 bam 21.3 GB
EGAF50001042886 bam 22.6 GB
EGAF50001042887 bam 24.5 GB
EGAF50001042888 bam 20.3 GB
EGAF50001042889 bam 23.6 GB
EGAF50001042890 bam 20.6 GB
EGAF50001042891 bam 21.0 GB
EGAF50001042892 bam 22.4 GB
EGAF50001042893 bam 25.3 GB
EGAF50001042894 bam 23.4 GB
EGAF50001042895 bam 23.1 GB
EGAF50001042896 bam 21.5 GB
EGAF50001042897 bam 22.6 GB
EGAF50001042898 bam 22.8 GB
EGAF50001042899 bam 27.3 GB
EGAF50001042900 bam 24.7 GB
EGAF50001042901 bam 23.3 GB
EGAF50001042902 bam 24.7 GB
EGAF50001042903 bam 23.2 GB
EGAF50001042904 bam 23.7 GB
EGAF50001042905 bam 26.4 GB
EGAF50001042906 bam 12.7 GB
EGAF50001042907 bam 12.1 GB
EGAF50001042908 bam 12.2 GB
EGAF50001042909 bam 11.9 GB
EGAF50001042910 bam 11.4 GB
EGAF50001042911 bam 11.5 GB
EGAF50001042912 bam 12.6 GB
EGAF50001042913 bam 21.1 GB
EGAF50001042914 bam 32.6 GB
EGAF50001042915 bam 37.9 GB
EGAF50001042916 bam 23.7 GB
EGAF50001042917 bam 11.2 GB
EGAF50001042918 bam 10.9 GB
EGAF50001042919 bam 22.8 GB
EGAF50001042920 bam 12.5 GB
EGAF50001042921 bam 11.8 GB
EGAF50001042922 bam 11.7 GB
EGAF50001042923 bam 21.9 GB
EGAF50001042924 bam 23.0 GB
EGAF50001042925 bam 20.4 GB
EGAF50001042926 bam 20.7 GB
EGAF50001042927 bam 24.6 GB
EGAF50001042928 bam 22.5 GB
EGAF50001042929 bam 21.6 GB
EGAF50001042930 bam 26.8 GB
EGAF50001042931 bam 21.6 GB
EGAF50001042945 bam 34.7 GB
EGAF50001042946 bam 24.6 GB
EGAF50001042947 bam 23.9 GB
EGAF50001042948 bam 20.3 GB
EGAF50001042949 bam 24.8 GB
EGAF50001042950 bam 20.9 GB
EGAF50001042951 bam 21.2 GB
EGAF50001042952 bam 22.3 GB
EGAF50001042953 bam 24.7 GB
EGAF50001042954 bam 22.0 GB
EGAF50001042955 bam 23.9 GB
EGAF50001042956 bam 21.1 GB
EGAF50001042957 bam 19.9 GB
EGAF50001042958 bam 22.8 GB
EGAF50001042964 bam 19.1 GB
EGAF50001042973 bam 26.9 GB
EGAF50001043015 bam 20.2 GB
EGAF50001043016 bam 19.5 GB
EGAF50001043017 bam 18.6 GB
EGAF50001043018 bam 37.4 GB
EGAF50001043031 bam 20.0 GB
EGAF50001043032 bam 12.7 GB
EGAF50001043033 bam 12.7 GB
EGAF50001043034 bam 31.3 GB
EGAF50001043042 bam 24.3 GB
EGAF50001043043 bam 26.9 GB
EGAF50001043044 bam 12.2 GB
EGAF50001043045 bam 36.5 GB
EGAF50001043068 bam 18.2 GB
EGAF50001043069 bam 20.3 GB
EGAF50001043070 bam 19.0 GB
EGAF50001043071 bam 31.2 GB
EGAF50001043072 bam 34.2 GB
EGAF50001043073 bam 33.2 GB
EGAF50001043074 bam 34.8 GB
EGAF50001043075 bam 35.6 GB
EGAF50001043076 bam 34.5 GB
EGAF50001043077 bam 30.4 GB
EGAF50001043078 bam 28.4 GB
EGAF50001043079 bam 24.6 GB
EGAF50001043080 bam 26.6 GB
EGAF50001043081 bam 33.4 GB
EGAF50001043082 bam 29.7 GB
EGAF50001043083 bam 37.5 GB
EGAF50001043084 bam 38.1 GB
EGAF50001043085 bam 23.3 GB
EGAF50001043088 bam 34.5 GB
EGAF50001043089 bam 32.3 GB
156 Files (3.9 TB)