About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Shallow Whole-Genome Sequencing in Stage II colorectal mucinous adenocarcinoma

Shallow whole-genome sequencing Fastq files from 187 patients with stage II colorectal mucinous adenocarcinoma.

Request Access

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

Data Access Policy for Sequencing Data from GUTS at Radboudumc Department of Pathology

Policy Content Access to this dataset is controlled by the designated Data Access Committee (DAC). Researchers wishing to access the data must submit a data access request describing the proposed research project, institutional affiliation, and intended use of the data. 1. Permitted use The Data Recipient shall use the Data solely for the research project approved by the DAC. Use of the Data is limited to biomedical research related to the disease or research area for which the data were originally collected, unless broader use is permitted by the applicable informed consent and ethical approval. Research outside the permitted disease or biomedical research area requires prior written approval from the DAC and may require a new data access application or agreement. 2. Confidentiality The Data Recipient must preserve the confidentiality of the data and protect the privacy of all research participants. 3. No re-identification The Data Recipient and authorised personnel must not attempt to identify or re-identify any research participant from the data. 4. Data security The data must be stored and processed within a secure institutional computing environment. Appropriate safeguards must include access control, password protection and/or encryption, logging and auditing, malware protection, and secure backup procedures. 5. Authorised personnel Access to the data is limited to authorised personnel approved under the relevant data access request. The Data Recipient is responsible for ensuring that authorised personnel comply with these terms. 6. Data sharing The data must not be transferred, disclosed, or redistributed to unauthorised individuals or third parties. External collaborators who require access must obtain separate approval or submit a separate data access request. 7. Publications and acknowledgement Publications and other research outputs resulting from use of the data should acknowledge the Data Producers and reference the European Genome-Phenome Archive (EGA) and the relevant accession number, where applicable. 8. Breach and termination Any unauthorised access, disclosure, loss, or misuse of the data must be reported promptly to the relevant Data Controller(s) and/or DAC. Failure to comply with these terms may result in suspension or termination of data access. 9. Data quality and liability The Data Recipient acknowledges that the Data Producers and all other parties involved in the creation, funding, or protection of the Data make no warranty or representation, express or implied, as to the accuracy, quality, or comprehensiveness of the Data. To the fullest extent permitted by law, they exclude liability for any actions, claims, proceedings, demands, losses, costs, damages, or payments arising directly or indirectly from the Data Recipient’s use of the Data, or from the unavailability of or interruption in access to the Data and bear no responsibility for any further analysis or interpretation of the Data. 10. Intellectual property The Data Recipient agrees not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of the Data or any conclusion drawn directly from the Data. 11. Data destruction The Data Recipient agrees to destroy or securely delete the Data once they are no longer used for the approved research project, unless retention is required for archival purposes in accordance with applicable audit or legal requirements.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002201 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50001068419 fastq.gz 406.2 MB
EGAF50001068420 fastq.gz 394.6 MB
EGAF50001068421 fastq.gz 440.9 MB
EGAF50001068422 fastq.gz 431.8 MB
EGAF50001068423 fastq.gz 452.8 MB
EGAF50001068424 fastq.gz 426.0 MB
EGAF50001068425 fastq.gz 476.7 MB
EGAF50001068426 fastq.gz 512.3 MB
EGAF50001068427 fastq.gz 336.1 MB
EGAF50001068428 fastq.gz 469.6 MB
EGAF50001068429 fastq.gz 273.6 MB
EGAF50001068430 fastq.gz 485.9 MB
EGAF50001068431 fastq.gz 412.4 MB
EGAF50001068432 fastq.gz 457.1 MB
EGAF50001068433 fastq.gz 667.3 MB
EGAF50001068434 fastq.gz 465.2 MB
EGAF50001068435 fastq.gz 399.1 MB
EGAF50001068436 fastq.gz 353.9 MB
EGAF50001068437 fastq.gz 402.9 MB
EGAF50001068438 fastq.gz 2.2 GB
EGAF50001068439 fastq.gz 447.5 MB
EGAF50001068440 fastq.gz 483.3 MB
EGAF50001068441 fastq.gz 509.3 MB
EGAF50001068442 fastq.gz 589.4 MB
EGAF50001068443 fastq.gz 513.8 MB
EGAF50001068444 fastq.gz 411.6 MB
EGAF50001068445 fastq.gz 306.9 MB
EGAF50001068446 fastq.gz 432.5 MB
EGAF50001068447 fastq.gz 455.7 MB
EGAF50001068448 fastq.gz 552.6 MB
EGAF50001068449 fastq.gz 590.1 MB
EGAF50001068450 fastq.gz 545.4 MB
EGAF50001068451 fastq.gz 550.2 MB
EGAF50001068452 fastq.gz 693.2 MB
EGAF50001068453 fastq.gz 665.1 MB
EGAF50001068454 fastq.gz 333.2 MB
EGAF50001068455 fastq.gz 568.6 MB
EGAF50001068456 fastq.gz 419.5 MB
EGAF50001068457 fastq.gz 555.7 MB
EGAF50001068458 fastq.gz 540.0 MB
EGAF50001068459 fastq.gz 492.4 MB
EGAF50001068460 fastq.gz 753.3 MB
EGAF50001068461 fastq.gz 700.8 MB
EGAF50001068462 fastq.gz 820.2 MB
EGAF50001068463 fastq.gz 690.3 MB
EGAF50001068464 fastq.gz 631.9 MB
EGAF50001068465 fastq.gz 702.0 MB
EGAF50001068466 fastq.gz 677.2 MB
EGAF50001068467 fastq.gz 643.9 MB
EGAF50001068468 fastq.gz 324.5 MB
EGAF50001068469 fastq.gz 317.8 MB
EGAF50001068470 fastq.gz 169.3 MB
EGAF50001068471 fastq.gz 488.6 MB
EGAF50001068472 fastq.gz 393.2 MB
EGAF50001068473 fastq.gz 519.4 MB
EGAF50001068474 fastq.gz 2.8 GB
EGAF50001068475 fastq.gz 334.2 MB
EGAF50001068476 fastq.gz 547.3 MB
EGAF50001068477 fastq.gz 436.1 MB
EGAF50001068478 fastq.gz 314.9 MB
EGAF50001068479 fastq.gz 312.7 MB
EGAF50001068480 fastq.gz 535.9 MB
EGAF50001068481 fastq.gz 590.6 MB
EGAF50001068482 fastq.gz 539.8 MB
EGAF50001068483 fastq.gz 365.0 MB
EGAF50001068484 fastq.gz 251.0 MB
EGAF50001068485 fastq.gz 235.0 MB
EGAF50001068486 fastq.gz 555.0 MB
EGAF50001068487 fastq.gz 338.9 MB
EGAF50001068488 fastq.gz 496.0 MB
EGAF50001068489 fastq.gz 2.1 GB
EGAF50001068490 fastq.gz 223.3 MB
EGAF50001068491 fastq.gz 293.6 MB
EGAF50001068492 fastq.gz 489.7 MB
EGAF50001068493 fastq.gz 300.5 MB
EGAF50001068494 fastq.gz 547.0 MB
EGAF50001068495 fastq.gz 533.6 MB
EGAF50001068496 fastq.gz 575.2 MB
EGAF50001068497 fastq.gz 1.6 GB
EGAF50001068498 fastq.gz 362.3 MB
EGAF50001068499 fastq.gz 503.8 MB
EGAF50001068500 fastq.gz 449.3 MB
EGAF50001068501 fastq.gz 413.9 MB
EGAF50001068502 fastq.gz 361.8 MB
EGAF50001068503 fastq.gz 310.6 MB
EGAF50001068504 fastq.gz 510.6 MB
EGAF50001068505 fastq.gz 413.6 MB
EGAF50001068506 fastq.gz 493.6 MB
EGAF50001068507 fastq.gz 130.4 MB
EGAF50001068508 fastq.gz 504.7 MB
EGAF50001068509 fastq.gz 342.0 MB
EGAF50001068510 fastq.gz 223.2 MB
EGAF50001068511 fastq.gz 208.1 MB
EGAF50001068512 fastq.gz 444.8 MB
EGAF50001068513 fastq.gz 250.9 MB
EGAF50001068514 fastq.gz 294.4 MB
EGAF50001068515 fastq.gz 443.0 MB
EGAF50001068516 fastq.gz 509.2 MB
EGAF50001068517 fastq.gz 290.8 MB
EGAF50001068518 fastq.gz 458.5 MB
EGAF50001068519 fastq.gz 259.3 MB
EGAF50001068520 fastq.gz 352.6 MB
EGAF50001068521 fastq.gz 2.0 GB
EGAF50001068522 fastq.gz 259.9 MB
EGAF50001068523 fastq.gz 214.3 MB
EGAF50001068524 fastq.gz 359.2 MB
EGAF50001068525 fastq.gz 402.0 MB
EGAF50001068526 fastq.gz 408.1 MB
EGAF50001068527 fastq.gz 386.0 MB
EGAF50001068528 fastq.gz 221.3 MB
EGAF50001068529 fastq.gz 442.3 MB
EGAF50001068530 fastq.gz 484.4 MB
EGAF50001068531 fastq.gz 679.7 MB
EGAF50001068532 fastq.gz 343.7 MB
EGAF50001068533 fastq.gz 381.6 MB
EGAF50001068534 fastq.gz 617.9 MB
EGAF50001068535 fastq.gz 483.3 MB
EGAF50001068536 fastq.gz 474.4 MB
EGAF50001068537 fastq.gz 708.3 MB
EGAF50001068538 fastq.gz 542.6 MB
EGAF50001068539 fastq.gz 536.4 MB
EGAF50001068540 fastq.gz 645.4 MB
EGAF50001068541 fastq.gz 512.4 MB
EGAF50001068542 fastq.gz 353.9 MB
EGAF50001068543 fastq.gz 284.0 MB
EGAF50001068544 fastq.gz 367.5 MB
EGAF50001068545 fastq.gz 408.4 MB
EGAF50001068546 fastq.gz 152.2 MB
EGAF50001068547 fastq.gz 277.5 MB
EGAF50001068548 fastq.gz 501.9 MB
EGAF50001068549 fastq.gz 703.4 MB
EGAF50001068550 fastq.gz 680.7 MB
EGAF50001068551 fastq.gz 713.2 MB
EGAF50001068552 fastq.gz 385.1 MB
EGAF50001068553 fastq.gz 380.9 MB
EGAF50001068554 fastq.gz 569.9 MB
EGAF50001068555 fastq.gz 486.9 MB
EGAF50001068556 fastq.gz 641.0 MB
EGAF50001068557 fastq.gz 344.5 MB
EGAF50001068558 fastq.gz 666.1 MB
EGAF50001068559 fastq.gz 608.5 MB
EGAF50001068560 fastq.gz 671.7 MB
EGAF50001068561 fastq.gz 657.2 MB
EGAF50001068562 fastq.gz 635.1 MB
EGAF50001068563 fastq.gz 547.5 MB
EGAF50001068564 fastq.gz 528.3 MB
EGAF50001068565 fastq.gz 643.6 MB
EGAF50001068566 fastq.gz 515.7 MB
EGAF50001068567 fastq.gz 516.7 MB
EGAF50001068568 fastq.gz 613.4 MB
EGAF50001068569 fastq.gz 591.4 MB
EGAF50001068570 fastq.gz 539.8 MB
EGAF50001068571 fastq.gz 545.4 MB
EGAF50001068572 fastq.gz 635.9 MB
EGAF50001068573 fastq.gz 623.4 MB
EGAF50001068574 fastq.gz 479.8 MB
EGAF50001068575 fastq.gz 446.0 MB
EGAF50001068576 fastq.gz 587.8 MB
EGAF50001068577 fastq.gz 659.3 MB
EGAF50001068578 fastq.gz 516.8 MB
EGAF50001068579 fastq.gz 477.7 MB
EGAF50001068580 fastq.gz 515.3 MB
EGAF50001068581 fastq.gz 622.4 MB
EGAF50001068582 fastq.gz 494.5 MB
EGAF50001068583 fastq.gz 532.9 MB
EGAF50001068584 fastq.gz 214.6 MB
EGAF50001068585 fastq.gz 344.3 MB
EGAF50001068586 fastq.gz 550.1 MB
EGAF50001068587 fastq.gz 259.4 MB
EGAF50001068588 fastq.gz 635.1 MB
EGAF50001068589 fastq.gz 720.6 MB
EGAF50001068590 fastq.gz 557.2 MB
EGAF50001068591 fastq.gz 487.2 MB
EGAF50001068592 fastq.gz 627.9 MB
EGAF50001068593 fastq.gz 110.0 MB
EGAF50001068594 fastq.gz 910.7 MB
EGAF50001068595 fastq.gz 630.0 MB
EGAF50001068596 fastq.gz 325.2 MB
EGAF50001068597 fastq.gz 363.1 MB
EGAF50001068598 fastq.gz 436.6 MB
EGAF50001068599 fastq.gz 427.0 MB
EGAF50001068600 fastq.gz 676.4 MB
EGAF50001068601 fastq.gz 403.8 MB
EGAF50001068602 fastq.gz 518.3 MB
EGAF50001068603 fastq.gz 403.0 MB
EGAF50001068604 fastq.gz 656.1 MB
EGAF50001068605 fastq.gz 601.7 MB
187 Files (96.8 GB)