About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Buffy coat dataset 5

Single-cell DNA methylation profiling (sciMET) of buffy coat nuclei from eight healthy adult donors (3 male, 5 female; seven European and one Asian ancestry), to characterize the effects of donor genetic diversity in pooled single-cell DNA methylation experiments. The dataset was generated using a pooled design: all eight donors mixed before tagmentation, 5,000 nuclei per well, donors assigned afterwards with cellsnp-lite and Vireo). The libraries followed the sciMET v2 protocol instead of the commercial kit, with modified ligation (T4 PNK/T4 ligase with PEG 8000, 1,3-propanediol, ETSSB and H10 P5 adapter) and amplification (Kapa HiFi Uracil, 15 cycles) reactions.

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Data policy of Data Access Committee of UZ Leuven

The procedure described below always applies to re-use transfer of genomic or genetic data that are in an external database. This external database can be the European Genome-phenome Archive (EGA). When a researcher receives requests for reuse of data, or when the database requires an intervention of a data access committee, the DAC will assess these requests for reuse and transfer of genomic or genetic data by third parties. Patient consent to research participation (ICF) and compatibility with new data processing should be checked. An application should be submitted at dac@uzleuven.be. So applications for re-use of genomic/genomic data go through the DAC. In the first place, DAC performs a front desk function here. An application form should be completed by the applicant. To begin with, the DAC employee then checks the ICF and its compatibility with further use. The DAC employee also ensures that a check is made with the competent services to ensure that there are no legal impediments. If i) there are possible commercial interests (commercial use of the data by the recipient or the requesting party is a commercial party), ii) the researcher does not agree, or iii) there is some ambiguity about potential risks of the data transfer (e.g. violation (GDPR) legislation, identity of recipient party, use of the data), the question is referred to the DAC advisory board.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002212 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50001069976 fastq.gz 518.4 MB
EGAF50001069977 fastq.gz 487.2 MB
EGAF50001069978 fastq.gz 4.2 GB
EGAF50001069979 fastq.gz 4.3 GB
EGAF50001069980 fastq.gz 934.9 MB
EGAF50001069981 fastq.gz 926.7 MB
EGAF50001069982 fastq.gz 8.6 GB
EGAF50001069983 fastq.gz 8.7 GB
EGAF50001069984 fastq.gz 6.5 GB
EGAF50001069985 fastq.gz 6.6 GB
EGAF50001069986 fastq.gz 735.0 MB
EGAF50001069987 fastq.gz 725.5 MB
EGAF50001069988 fastq.gz 339.0 MB
EGAF50001069989 fastq.gz 322.1 MB
EGAF50001069990 fastq.gz 2.8 GB
EGAF50001069991 fastq.gz 2.7 GB
EGAF50001069992 fastq.gz 4.5 GB
EGAF50001069993 fastq.gz 510.2 MB
EGAF50001069994 fastq.gz 511.9 MB
EGAF50001069995 fastq.gz 4.5 GB
EGAF50001070164 fastq.gz 7.4 GB
EGAF50001070165 fastq.gz 7.5 GB
EGAF50001070166 fastq.gz 850.2 MB
EGAF50001070167 fastq.gz 820.7 MB
24 Files (75.9 GB)