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13424 results for ""60+mice"+"6+weeks"+diet+study+2014+2017+DOI"

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General Study Dataset

Type

blog dac dataset documentation study

Repository

dbgap ega jga

Federated ega

finland norway poland spain sweden

Study type

affected sib pairs aggregate genomic data amplicon sequencing atac sequencing cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical genetic testing clinical trial cohort collection community control set controlled trial copy number variation (cnv) cross-sectional double-blind electronic medical records epigenetics eqtl exome sequencing extended pedigrees family family linkage forensic or paleo-genomics full transcriptome sequencing gene regulation study genotype genotype/expression genotype/expression array gwas individual-level genomic data interventional longitudinal longitudinal cohort marker discovery mendelian meta-analysis metagenomics metastasis methods development mixed multicenter multiplex families nested case-control nuclear families observational other parent-offspring parent-offspring trios partial factorial randomized phase iii placebo-controlled pooled clone sequencing population population genomics population-based control set probands prospective quantitative cross-sectional randomized randomized controlled clinical trial reference set resequencing rna sequencing rnaseq sequencing sibling cohort single cell analysis single cell rna sequence single cell rna sequencing single patient snp array analysis stem cell lines synthetic genomics targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal twin virus capture sequencing whole genome sequencing whole-genome bisulfite sequencing xenograft

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

ab 3730xl genetic analyzer ab 5500xl genetic analyzer ab solid 4 system affy mirna 3.0 array affymetrics axiom snp array 2.0 affymetrix affymetrix 6.0 array affymetrix 6.0; cytoscan affymetrix axiom genome-wide asi 1 array affymetrix axiom genome-wide human origins array affymetrix biobank array affymetrix oncoscan ffpe express affymetrix, thermo fisher scientific agilent human mirna microarray axiom uk biobank array bgiseq-500 clariomâ„¢ d human assay complete genomics coreexome illumina snp chip array dnbseq-g400 dnbseq-t7 epic beadchip h and e image hiseq x five hiseq x ten human cardio metabochip human clariom d arrays human genome u219 array plate humanht-12 illumina illumina (epic array) illumina 450k illumina cardio-metabochip illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina global screening array illumina gsa v1.0 illumina hiscansq illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina human core exome 12v1-1_a illumina human omni1-quad beadchip. illumina humancoreexome beadchip array illumina humancoreexome-12v1-1_a illumina humancoreexome-24v1-0 illumina humancoreexome-24v1-1 illumina humanmethylation450 illumina humanomni1-quad_v1-0 illumina humanomni1-quad_v1-0, humanomniexpress-12-v1-0, humanomniexpress-24-v1-1, humanomni25-8v1-2_a1 illumina humanomni2-5_8v1_a illumina humanomni2-5m-8v1-1_b illumina humanomni2.5 illumina humanomni2.5-8 illumina humanomni5-quad and exome sequencing illumina humanomniexpress-12 illumina humanomniexpress-12-v1-0 illumina humanomniexpress-24-v1-1 illumina humanwg-6 illumina humanwg-6 version 3 or illumina humanht-12 expression bead chip, combined on identical nucleotide universal identifiers. illumina infinium epic illumina infinium h3africa (v2) with custom add-ons illumina infinium immunochip illumina infiniumomniexpressexome-8 illumina mega array illumina methylationepic v2.0 illumina miniseq illumina miseq illumina novaseq 6000 illumina novaseq x illumina novaseq x plus illumina omni 2.5 illumina omni 2.5m illumina oncoarray illumina sangerddd_omniexplusv1_15019773 infinium gsa infinium methylationepic array infinium omniexpressexome-8 v.1.3 beadchip ion genestudio s5 ion torrent pgm ion torrent proton ion torrent s5 xl llumina 2.5-8 massarrayiplex genotyping assay using the iplex gold genotyping kit minion nanostring technology nextseq 2000 nextseq 500 nextseq 550 nimblegen hg18 cgh 385k omniexpress omniexpress-24 v1.1 pacbio rs ii pcr-based kasp assay promethion qexactive plus sanger sequencing sequel sequel ii sequel iie sequenom massarray (agena bioscience) somascan 1.3k proteomic assay uk biobank axiomâ„¢ array unspecified

Phenotypes

[CHEBI:33699] [CL:0000037] [CL:0000041] [CL:0000049] [CL:0000050] [CL:0000051] [CL:0000057] [CL:0000084] [CL:0000094] [CL:0000096] [CL:0000235] [CL:0000236] [CL:0000557] [CL:0000576] [CL:0000624] [CL:0000625] [CL:0000765] [CL:0000786] [CL:0000837] [CL:0000842] [CL:0000844] [CL:0000863] [CL:0000890] [CL:0000945] [CL:0002026] [CL:0002057] [CL:2000006] [DOID:0050756] [EFO:0000094] [EFO:0000174] [EFO:0000209] [EFO:0000211] [EFO:0000220] [EFO:0000222] [EFO:0000272] [EFO:0000275] [EFO:0000280] [EFO:0000285] [EFO:0000309] [EFO:0000322] [EFO:0000330] [EFO:0000339] [EFO:0000349] [EFO:0000403] [EFO:0000478] [EFO:0000519] [EFO:0000540] [EFO:0000565] [EFO:0000574] [EFO:0000586] [EFO:0000609] [EFO:0000632] [EFO:0000637] [EFO:0000693] [EFO:0000761] [EFO:0000980] [EFO:0001461] [EFO:0001663] [EFO:0001905] [EFO:0002001] [EFO:0002002] [EFO:0002422] [EFO:0002499] [EFO:0002508] [EFO:0002539] [EFO:0002759] [EFO:0002939] [EFO:0002966] [EFO:0003025] [EFO:0003094] [EFO:0003885] [EFO:0003897] [EFO:0003940] [EFO:0004281] [EFO:0004905] [EFO:0005023] [EFO:0005543] [EFO:0005699] [EFO:0005704] [EFO:0005705] [EFO:0005706] [EFO:0005707] [EFO:0005708] [EFO:0005709] [EFO:0005710] [EFO:0005711] [EFO:0005712] [EFO:0005740] [EFO:0005803] [EFO:0005922] [EFO:0006545] [EFO:0009119] [EFO:0009121] [EFO:0009443] [EFO:0010064] [EFO:1000028] [EFO:1000042] [EFO:1000068] [EFO:1000069] [EFO:1000177] [EFO:1000180] [EFO:1000231] [EFO:1000238] [EFO:1000327] [EFO:1000490] [EFO:1001480] [EFO:1001514] [EFO:1001515] [EFO:1001830] [EFO:1001956] [EFO:1001958] [EFO:1002008] [HP:0000001] [HP:0000002] [HP:0000008] [HP:0000009] [HP:0000010] [HP:0000014] [HP:0000020] [HP:0000022] [HP:0000023] [HP:0000028] [HP:0000032] [HP:0000035] [HP:0000036] [HP:0000045] [HP:0000047] [HP:0000049] [HP:0000062] [HP:0000069] [HP:0000073] [HP:0000076] [HP:0000077] [HP:0000078] [HP:0000079] [HP:0000085] [HP:0000086] [HP:0000089] [HP:0000098] [HP:0000100] [HP:0000104] [HP:0000107] [HP:0000110] [HP:0000118] [HP:0000119] [HP:0000121] [HP:0000125] 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[HP:0002031] [HP:0002032] [HP:0002034] [HP:0002037] [HP:0002058] [HP:0002059] [HP:0002060] [HP:0002061] [HP:0002063] [HP:0002070] [HP:0002072] [HP:0002073] [HP:0002079] [HP:0002086] [HP:0002087] [HP:0002088] [HP:0002090] [HP:0002092] [HP:0002093] [HP:0002094] [HP:0002098] [HP:0002099] [HP:0002104] [HP:0002109] [HP:0002115] [HP:0002118] [HP:0002119] [HP:0002121] [HP:0002123] [HP:0002126] [HP:0002127] [HP:0002132] [HP:0002133] [HP:0002134] [HP:0002143] [HP:0002148] [HP:0002162] [HP:0002164] [HP:0002167] [HP:0002170] [HP:0002186] [HP:0002187] [HP:0002188] [HP:0002194] [HP:0002197] [HP:0002202] [HP:0002205] [HP:0002208] [HP:0002209] [HP:0002212] [HP:0002219] [HP:0002232] [HP:0002236] [HP:0002240] [HP:0002242] [HP:0002247] [HP:0002250] [HP:0002251] [HP:0002263] [HP:0002265] [HP:0002275] [HP:0002281] [HP:0002283] [HP:0002286] [HP:0002307] [HP:0002308] [HP:0002311] [HP:0002315] [HP:0002342] [HP:0002352] [HP:0002353] [HP:0002360] [HP:0002366] [HP:0002370] [HP:0002371] [HP:0002373] [HP:0002376] [HP:0002394] [HP:0002410] [HP:0002414] [HP:0002418] [HP:0002421] [HP:0002435] [HP:0002438] [HP:0002450] [HP:0002453] [HP:0002470] [HP:0002475] [HP:0002500] [HP:0002507] [HP:0002518] [HP:0002539] [HP:0002553] [HP:0002557] [HP:0002558] [HP:0002564] [HP:0002575] [HP:0002577] [HP:0002583] [HP:0002589] [HP:0002591] [HP:0002597] [HP:0002607] [HP:0002633] [HP:0002644] [HP:0002645] [HP:0002648] [HP:0002650] [HP:0002652] [HP:0002664] [HP:0002665] [HP:0002683] [HP:0002705] [HP:0002715] [HP:0002719] [HP:0002721] [HP:0002744] [HP:0002748] [HP:0002756] [HP:0002757] [HP:0002761] [HP:0002763] [HP:0002777] [HP:0002778] [HP:0002779] [HP:0002780] [HP:0002783] [HP:0002788] [HP:0002793] [HP:0002795] [HP:0002803] [HP:0002804] [HP:0002808] [HP:0002813] [HP:0002814] [HP:0002815] [HP:0002817] [HP:0002818] [HP:0002823] [HP:0002825] [HP:0002827] [HP:0002857] [HP:0002907] [HP:0002921] [HP:0002926] [HP:0002937] [HP:0002943] [HP:0002944] [HP:0002949] [HP:0002967] [HP:0002974] [HP:0002977] [HP:0002979] [HP:0002981] 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[HP:0100545] [HP:0100547] [HP:0100555] [HP:0100556] [HP:0100559] [HP:0100594] [HP:0100627] [HP:0100656] [HP:0100659] [HP:0100660] [HP:0100665] [HP:0100704] [HP:0100705] [HP:0100736] [HP:0100737] [HP:0100738] [HP:0100742] [HP:0100746] [HP:0100755] [HP:0100763] [HP:0100764] [HP:0100790] [HP:0100806] [HP:0100807] [HP:0100817] [HP:0100836] [HP:0100851] [HP:0100852] [HP:0100871] [HP:0100876] [HP:0100886] [HP:0100887] [HP:0200006] [HP:0200007] [HP:0200013] [HP:0200021] [HP:0200053] [HP:0200055] [MONDO:0002598] [MONDO:0002627] [MONDO:0002631] [MONDO:0002728] [MONDO:0003478] [MONDO:0003537] [MONDO:0004050] [MONDO:0004301] [MONDO:0005072] [MONDO:0013296] [MONDO:0016642] [MONDO:0016690] [MONDO:0016691] [MONDO:0016700] [MONDO:0018177] [MONDO:0019470] [MONDO:0019474] [MONDO:0020511] [MONDO:0020560] [MONDO:0100096] [MONDO:0100342] [NCIT:C0549184] [NCIT:C115935] [NCIT:C200033] [NCIT:C27204] [NCIT:C2952] [NCIT:C3099] [NCIT:C3468] [NCIT:C4737] [NCIT:C4873] [Orphanet:110] [Orphanet:183518] [Orphanet:217569] [Orphanet:2322] [Orphanet:3095] [Orphanet:552] [Orphanet:63] [Orphanet:791] [Orphanet:886] [Orphanet:98664] [Orphanet:98892] [PATO:0000461] [UBERON:0001968] [UBERON:0002046] [UBERON:0002371] [UBERON:0002372] [UBERON:0010393] [UBERON:0012168] [UBERON:0013756]

Duo

0000001 0000004 0000005 0000006 0000007 0000010 0000011 0000012 0000014 0000015 0000016 0000017 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000043 0000044 0000045 0000046

Clear

SNV vcf files for CPCG Subclonal Heterogeneity

SNV calls generated using the MuTect-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
Dataset EGAD00001004401
CNA vcf files for CPCG Subclonal Heterogeneity

CNA calls generated using the SomaticSniper-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
Dataset EGAD00001004405
Mesothelioma Whole Genomes

Genomic architecture of mesothelioma parent study is project 925. This project is set up in parallel to project 925 in order to Whole genome sequence ten of the 59 tumours in that project.
Dataset EGAD00001001265
FFPE CPA Accreditation Study

FFPE CPA accreditation of genome-scale sequencing in routinely collected formalin-fixed paraffin-embedded (FFPE) cancer specimens versus matched fresh-frozen samples using targeted pulldown capture prior to Illumina sequencing.
Dataset EGAD00001000678
The University of Hong Kong Gastric Cancer XClone Study Single Cell CNV Data

Single cell encapsulation and DNA libraries were prepared by Chromium™ Single Cell DNA Reagent Kits and Chromium™ Single Cell C and D Chip Kits.
Dataset EGAD00001015383
CNA vcf files for CPCG Subclonal Heterogeneity

CNA calls generated using the MuTect-TITAN-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
Dataset EGAD00001004404
Epilepsy related sudden death (2019-08-21)

These samples include exome sequences of samples from patients who suffered Sudden Unexplained Death in Epilepsy. They all are of European descent. . This dataset contains all the data available for this study on 2019-08-21.
Dataset EGAD00001005276
SNV vcf files for CPCG Subclonal Heterogeneity

SNV calls generated using the SomaticSniper-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
Dataset EGAD00001004402
CNA vcf files for CPCG Subclonal Heterogeneity

CNA calls generated using the MuTect-Battenberg-PhyloWGS from the CPC-GENE Subclonal Heterogeneity study
Dataset EGAD00001004403
Genome and transcriptome sequence data from a diffuse aarge B-cell lymphoma (relapse) tumor patient

Genome and transcriptome sequence data from a diffuse large B-cell lymphoma (relapse) patient, generated as part of the BC Cancer Agency's Pediatric Personalized Onco-Genomics study
Dataset EGAD00001015308

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