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General Study Dataset

Type

blog dac dataset documentation study

Repository

dbgap ega jga

Federated ega

norway

Study type

aggregate genomic data cancer genomics case set case-cohort case-control clinical cohort clinical trial cohort control set cross-sectional double-blind epigenetics eqtl exome sequencing family full transcriptome sequencing genotype genotype/expression interventional longitudinal longitudinal cohort marker discovery metagenomics methods development mixed other parent-offspring parent-offspring trios population genomics prospective rnaseq sequencing single cell analysis stem cell lines transcriptome analysis transcriptome sequencing tumor vs. matched-normal twin whole genome sequencing

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

affymetrix snp 6.0 epic_850k hiseq x ten illumina illumina cardio-metabochip illumina genome analyzer ii illumina genome analyzer iix illumina hiseq 2000 illumina hiseq 2500 illumina hiseq 4000 illumina infinium epic illumina miseq illumina nextseq 550 illumina novaseq 6000 ion torrent proton ion torrent s5 minion nanostring nanostring technology nextseq 2000 nextseq 500 nextseq 550 promethion sequel unspecified

Phenotypes

CL:0000786 EFO:0000222 EFO:0000272 EFO:0000402 EFO:0000519 EFO:0000693 EFO:0001461 EFO:0002499 EFO:0002939 EFO:0003094 EFO:0004281 EFO:0005543 EFO:0005699 EFO:1000028 EFO:1000069 EFO:1000177 EFO:1000180 EFO:1002008 MONDO:0003478 MONDO:0016642 MONDO:0016690 MONDO:0016691 MONDO:0016700 PATO:0000461

Duo

0000006 0000007 0000012 0000014 0000018 0000019 0000020 0000021 0000026 0000027 0000028 0000042

Clear

UK10K_NEURO_ASD_TAMPERE REL-2012-07-05

EGAD00001000232_UK10K_NEURO_ASD_TAMPERE_REL_2012_07_05
Dataset EGAD00001000232
UK10K_NEURO_EDINBURGH REL-2012-07-05

EGAD00001000233_UK10K_NEURO_EDINBURGH_REL_2012_07_05
Dataset EGAD00001000233
UK10K_NEURO_FSZNK REL-2012-07-05

EGAD00001000234_UK10K_NEURO_FSZNK_REL_2012_07_05
Dataset EGAD00001000234
UK10K_NEURO_IOP_COLLIER REL-2012-07-05

EGAD00001000235_UK10K_NEURO_IOP_COLLIER_REL_2012_07_05
Dataset EGAD00001000235
UK10K_NEURO_MUIR REL-2012-07-05

EGAD00001000236_UK10K_NEURO_MUIR_REL_2012_07_05
Dataset EGAD00001000236
UK10K_NEURO_GURLING REL-2012-07-05

EGAD00001000237_UK10K_NEURO_GURLING_REL_2012_07_05
Dataset EGAD00001000237
UK10K_NEURO_IMGSAC REL-2012-07-05

EGAD00001000239_UK10K_NEURO_IMGSAC_REL_2012_07_05
Dataset EGAD00001000239
UK10K_NEURO_FSZ REL-2012-07-05

UK10K_NEURO_FSZ_REL_2012_07_05
Dataset EGAD00001000240
UK10K_OBESITY_SCOOP REL-2012-07-05

EGAD00001000241_UK10K_OBESITY_SCOOP_REL_2012_07_05
Dataset EGAD00001000241
UK10K_NEURO_ASD_MGAS REL-2012-07-05

EGAD00001000242_UK10K_NEURO_ASD_MGAS_REL_2012_07_05
Dataset EGAD00001000242

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