BLUEPRINT release August 2016, Bisulfite-Seq for Mantle Cell Lymphoma, on genome GRCh38
Bisulfite-Seq data for 5 Mantle Cell Lymphoma sample(s). 65 run(s), 5 experiment(s), 10 analysis(s) on human genome GRCh38. Part of BLUEPRINT release August 2016. Analysis documentation available at http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/20160816/homo_sapiens/README_bisulphite_analysis_CNAG_20160816
Dataset
EGAD00001002505
BLUEPRINT release August 2016, Bisulfite-Seq for thymocyte, on genome GRCh38
Bisulfite-Seq data for 1 thymocyte sample(s). 14 run(s), 1 experiment(s), 2 analysis(s) on human genome GRCh38. Part of BLUEPRINT release August 2016. Analysis documentation available at http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/20160816/homo_sapiens/README_bisulphite_analysis_CNAG_20160816
Dataset
EGAD00001002440
RNASeq of TNBC
RNAseq data relative to 41 triple negative breast cancer patients.
Dataset
EGAD00001008542
TGL49_LFS cfMeDIP
Cell-free methylated DNA immunoprecipitation sequencing of plasma samples from patients with Li-Fraumeni syndrome.
Dataset
EGAD00001010013
Single-cell RNA sequencing generated from 11 glioma patient samples
This dataset includes paired-end fastq files from 6 IDH-mutant, 5 IDH-wild-type glioma patient samples of unmatched initial and recurrent timepoints profiled using single-cell RNA sequencing.
Dataset
EGAD00001007772
BLUEPRINT release August 2016, DNase-Hypersensitivity for CD14-positive, CD16-negative classical monocyte, on genome GRCh38
DNase-Hypersensitivity data for 28 CD14-positive, CD16-negative classical monocyte sample(s). 28 run(s), 28 experiment(s), 28 analysis(s) on human genome GRCh38. Part of BLUEPRINT release August 2016. Analysis documentation available at http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/20160816/homo_sapiens/README_dnaseseq_analysis_20160816
Dataset
EGAD00001002286
Hodgkin Lymphoma Whole Genome Sequencing
Whole genome sequencing of 17 paired tumor-normal Hodgkin Lymphoma whole genomes. Bulk tumor (-T) and flow-sorted Reed Sternberg cell (-HRS) samples. Approximately 30x wgs normal depth, 40-50x wgs depth tumor samples.
Dataset
EGAD00001009818
BLUEPRINT release August 2016, DNase-Hypersensitivity for CD34-negative, CD41-positive, CD42-positive megakaryocyte cell, on genome GRCh38
DNase-Hypersensitivity data for 3 CD34-negative, CD41-positive, CD42-positive megakaryocyte cell sample(s). 3 run(s), 3 experiment(s), 3 analysis(s) on human genome GRCh38. Part of BLUEPRINT release August 2016. Analysis documentation available at http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/20160816/homo_sapiens/README_dnaseseq_analysis_20160816
Dataset
EGAD00001002468
Bam files from whole exome sequencing (WES)from multiple laser microdissected regions from tumor and paired biopsies from metastatic lesions.
In this study we characterized genomic alterations in three bladder cancer patients with metastatic disease courses. Multiple regions were procured by laser microdissection or punctures from primary tumor, lymph node metastases and from distant metastases. Data provided here consist of 35 Bam files for WES (32 Tumors and 2 blood, 1 adjacent normal)
Dataset
EGAD00001002772
BLUEPRINT release August 2016, Bisulfite-Seq for osteoclast, on genome GRCh38
Bisulfite-Seq data for 2 osteoclast sample(s). 88 run(s), 4 experiment(s), 4 analysis(s) on human genome GRCh38. Part of BLUEPRINT release August 2016. Analysis documentation available at http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/20160816/homo_sapiens/README_bisulphite_analysis_CNAG_20160816
Dataset
EGAD00001002427