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12396 results for ""statistically+reactive"+taxa+in+microbial+community"

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blog dac dataset documentation study

Repository

dbgap ega jga

Federated ega

finland norway poland spain sweden

Study type

affected sib pairs aggregate genomic data amplicon sequencing atac sequencing cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical genetic testing clinical trial cohort collection community control set controlled trial copy number variation (cnv) cross-sectional double-blind electronic medical records epigenetics eqtl exome sequencing extended pedigrees family family linkage forensic or paleo-genomics full transcriptome sequencing gene regulation study genotype genotype/expression genotype/expression array gwas individual-level genomic data interventional longitudinal longitudinal cohort marker discovery mendelian meta-analysis metagenomics metastasis methods development mixed multicenter multiplex families nested case-control nuclear families observational other parent-offspring parent-offspring trios partial factorial randomized phase iii placebo-controlled pooled clone sequencing population population genomics population-based control set probands prospective quantitative cross-sectional randomized randomized controlled clinical trial reference set resequencing rna sequencing rnaseq sequencing sibling cohort single cell analysis single cell rna sequence single patient snp array analysis stem cell lines synthetic genomics targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal twin virus capture sequencing whole genome sequencing whole-genome bisulfite sequencing xenograft

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

3730xl 454 gs flx titanium 454 gs junior ab 3730xl genetic analyzer ab 5500 genetic analyzer ab 5500xl genetic analyzer ab solid 4 system ab solid system affy mirna 3.0 array affymetrics axiom snp array 2.0 affymetrix 6.0 array affymetrix axiom genome-wide human origins 1 array affymetrix axiom genome-wide human origins array affymetrix axiom human origins array affymetrix axiom lat affymetrix axiom ukb wcsg affymetrix axiomtm hgcov2 1 affymetrix cytoscan optima affymetrix genechip scanner 3000 7g affymetrix human gene 2.0 st array affymetrix human gene_1.0st array affymetrix human genome u133 plus 2.0 array affymetrix oncoscan axiom 815k spanish biobank array axiom® genome-wide human ceu 1 array beadarray bgiseq-500 complete genomics coreexome illumina snp chip array dnbseq-g400 dnbseq-t7 epic array (illumina) epic beadchip gencove genotyped using uk biobank axiom array (applied biosystems/thermofisher), read on genetitan multi channel system (affymetrix/thermofisher) and analysed with the axiom analysis suite (applied biosystems/thermofisher) gridion hiseq x five hiseq x ten hiseq x ten;illumina humancore-24 beadchip humanexome_12v1.1_a -gencall, zcall humanht-12 humanomniexpressexome-8 beadchip illumina illumina 450k illumina arrays illumina cardio-metabochip illumina dasl assay illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina global screening array illumina hiscan illumina hiscansq illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina hiseq4000 illumina ht12.4 illumina human core exome 12v1.1 illumina human omni1-quad beadchip. illumina humancoreexome-24v1 illumina humancoreexome-24v1-0 illumina humancoreexome-24v1-1 illumina humanimmuno v1.0 illumina humanmethylation450 illumina humanomni2.5-8 illumina humanomni25-8v1-1 illumina humanomni25m-8v1-1 illumina humanomni5-quad and exome sequencing illumina humanomniexpress-12 illumina humanomniexpress-12 v1. illumina humanomniexpress-12v1_j illumina humanwg-6 illumina humanwg-6 version 3 or illumina humanht-12 expression bead chip, combined on identical nucleotide universal identifiers. illumina infinium epic illumina infinium h3africa (v2) with custom add-ons illumina infinium humanmethylation epic beadchip illumina infinium humanmethylation450 beadchip arrays illumina infinium immunochip illumina infinium methylationepic illumina infinium methylationepic beadchip array illumina infiniumomniexpressexome-8 illumina iselect illumina iseq 100 illumina mega array illumina methylationepic array illumina miniseq illumina miseq illumina nextseq 500 illumina nextseq 550 illumina novaseq 6000 illumina novaseq x illumina novaseq x plus illumina omni 2.5m illumina omni express beadchip illumina omni2.5 illumina oncoarray illumina sangerddd_omniexplusv1_15019773 infinium cytosnp-850k v1.4 bead chips array, illumina infinium humanmethylation450 beadchip infinium humanmethylation450 beadchip array (450k array) infinium methylation epic beadchip infinium methylationepic array infinium methylationepic beadchip array infinium methylationepic v2.0 infinium omniexpressexome-8 v.1.3 beadchip ion genestudio s5 ion genestudio s5 prime ion torrent pgm ion torrent proton ion torrent s5 ion torrent s5 xl iscan, illumina low pass whole genome sequencing (lp-wgs) massarrayiplex genotyping assay using the iplex gold genotyping kit minion miseq na nanostring nanostring ncounter nextseq 1000 nextseq 2000 nextseq 500 nextseq 550 nimblegen hg18 cgh 385k omniexpress-24 v1.1 pacbio rs pacbio rs ii pcr-based kasp assay promethion qexactive plus revio sanger sequencing sanger(3730 xl) sequel sequel ii sequenom massarray (agena bioscience) smartseq2_adapted snp array snp genotyping array thermofisher scientific clariomtm d pico assay unknown humanomni2-5-8-v1-1-c unknown humanomni25-8v1-1 unknown humanomni25m-8v1-1 unspecified

Phenotypes

[CHEBI:17855] [CHEBI:33699] [CHEBI:39025] [CHEBI:39026] [CHEBI:75909] [CL:0000096] [CL:0000235] [CL:0000576] [CL:0000624] [CL:0000786] [CL:0000788] [CL:0000817] [CL:0000837] [CL:0000844] [CL:0000863] [CL:0000890] [CL:0000945] [CL:0000970] [CL:0000972] [CL:0002026] [CL:0002057] [CL:0002092] [CL:2000006] [DOID:0081004] [EFO:0000001] [EFO:0000094] [EFO:0000174] [EFO:0000182] [EFO:0000183] [EFO:0000196] [EFO:0000198] [EFO:0000209] [EFO:0000220] [EFO:0000222] [EFO:0000228] [EFO:0000239] [EFO:0000248] [EFO:0000272] [EFO:0000280] [EFO:0000289] [EFO:0000292] [EFO:0000305] [EFO:0000309] [EFO:0000311] [EFO:0000313] [EFO:0000322] [EFO:0000330] [EFO:0000339] [EFO:0000349] [EFO:0000402] [EFO:0000403] [EFO:0000437] [EFO:0000478] [EFO:0000502] [EFO:0000503] [EFO:0000519] [EFO:0000538] [EFO:0000565] [EFO:0000574] [EFO:0000616] [EFO:0000621] [EFO:0000622] [EFO:0000623] [EFO:0000624] [EFO:0000625] [EFO:0000632] [EFO:0000637] [EFO:0000681] [EFO:0000691] [EFO:0000693] [EFO:0000709] [EFO:0000730] [EFO:0000756] [EFO:0000760] [EFO:0000761] [EFO:0000762] [EFO:0000973] [EFO:0001071] [EFO:0001073] [EFO:0001074] [EFO:0001075] [EFO:0001076] [EFO:0001077] [EFO:0001078] [EFO:0001079] [EFO:0001080] [EFO:0001081] [EFO:0001360] [EFO:0001376] [EFO:0001378] [EFO:0001416] [EFO:0001461] [EFO:0001639] [EFO:0001663] [EFO:0001905] [EFO:0001942] [EFO:0002324] [EFO:0002394] [EFO:0002422] [EFO:0002424] [EFO:0002429] [EFO:0002499] [EFO:0002508] [EFO:0002532] [EFO:0002618] [EFO:0002759] [EFO:0002787] [EFO:0002885] [EFO:0002916] [EFO:0002917] [EFO:0002918] [EFO:0002933] [EFO:0002937] [EFO:0002939] [EFO:0003025] [EFO:0003032] [EFO:0003060] [EFO:0003094] [EFO:0003137] [EFO:0003756] [EFO:0003761] [EFO:0003811] [EFO:0003825] [EFO:0003847] [EFO:0003885] [EFO:0003897] [EFO:0003900] [EFO:0003940] [EFO:0004197] [EFO:0004248] [EFO:0004281] [EFO:0004340] [EFO:0004343] [EFO:0004422] [EFO:0004708] [EFO:0004890] [EFO:0004905] [EFO:0005168] [EFO:0005235] [EFO:0005537] [EFO:0005543] [EFO:0005699] [EFO:0005701] [EFO:0005704] [EFO:0005705] [EFO:0005706] [EFO:0005707] [EFO:0005708] [EFO:0005709] [EFO:0005710] [EFO:0005711] [EFO:0005712] [EFO:0005740] [EFO:0005782] [EFO:0005842] [EFO:0005844] [EFO:0005922] [EFO:0006335] [EFO:0006336] [EFO:0006460] [EFO:0006461] [EFO:0006492] [EFO:0006545] [EFO:0007143] [EFO:0007336] [EFO:0007365] [EFO:0007483] [EFO:0008498] [EFO:0008524] [EFO:0009052] [EFO:0009119] [EFO:0009120] [EFO:0009121] [EFO:0009375] [EFO:0009443] [EFO:0009654] [EFO:0009744] [EFO:0009907] [EFO:0010064] [EFO:0010105] [EFO:1000028] [EFO:1000042] [EFO:1000043] [EFO:1000068] [EFO:1000069] [EFO:1000075] [EFO:1000101] [EFO:1000102] [EFO:1000128] [EFO:1000138] [EFO:1000139] [EFO:1000144] [EFO:1000149] [EFO:1000177] [EFO:1000180] [EFO:1000211] [EFO:1000288] [EFO:1000292] [EFO:1000309] [EFO:1000311] [EFO:1000318] [EFO:1000327] [EFO:1000348] [EFO:1000349] [EFO:1000360] [EFO:1000388] [EFO:1000414] [EFO:1000416] [EFO:1000429] [EFO:1000453] [EFO:1000490] [EFO:1000575] [EFO:1000646] [EFO:1000796] [EFO:1001038] [EFO:1001176] [EFO:1001469] [EFO:1001480] [EFO:1001830] [EFO:1001938] [EFO:1001946] [EFO:1001947] [EFO:1001950] [EFO:1001951] [EFO:1001958] [EFO:1001963] [EFO:1002008] [HP:0000028] [HP:0000077] [HP:0000078] [HP:0000122] [HP:0000138] [HP:0000153] [HP:0000160] [HP:0000175] [HP:0000201] [HP:0000219] [HP:0000232] [HP:0000248] [HP:0000268] [HP:0000272] [HP:0000277] [HP:0000280] [HP:0000286] [HP:0000307] [HP:0000311] [HP:0000316] [HP:0000322] [HP:0000331] [HP:0000343] [HP:0000347] [HP:0000356] [HP:0000403] [HP:0000405] [HP:0000422] [HP:0000431] [HP:0000457] [HP:0000463] [HP:0000474] [HP:0000483] [HP:0000486] [HP:0000490] [HP:0000494] [HP:0000506] [HP:0000519] [HP:0000527] [HP:0000572] [HP:0000582] [HP:0000588] [HP:0000629] [HP:0000664] [HP:0000687] [HP:0000707] [HP:0000708] [HP:0000713] [HP:0000718] [HP:0000722] [HP:0000726] [HP:0000729] [HP:0000735] [HP:0000736] [HP:0000739] [HP:0000750] [HP:0000752] [HP:0000767] [HP:0000787] [HP:0000817] [HP:0000819] [HP:0000820] [HP:0000821] [HP:0000822] [HP:0000836] [HP:0000871] [HP:0000921] [HP:0000939] [HP:0000953] [HP:0000954] [HP:0000957] [HP:0000964] [HP:0000978] [HP:0001028] [HP:0001045] [HP:0001053] [HP:0001182] [HP:0001249] [HP:0001250] [HP:0001252] [HP:0001256] [HP:0001263] [HP:0001269] [HP:0001270] [HP:0001276] [HP:0001297] [HP:0001300] [HP:0001328] [HP:0001369] [HP:0001370] [HP:0001380] [HP:0001382] [HP:0001508] [HP:0001510] [HP:0001513] [HP:0001622] [HP:0001627] [HP:0001629] [HP:0001631] [HP:0001642] [HP:0001643] [HP:0001658] [HP:0001680] [HP:0001782] [HP:0001800] [HP:0001824] [HP:0001845] [HP:0001848] [HP:0001864] [HP:0001915] [HP:0001999] [HP:0002013] [HP:0002019] [HP:0002020] [HP:0002037] [HP:0002061] [HP:0002062] [HP:0002092] [HP:0002099] [HP:0002123] [HP:0002194] [HP:0002208] [HP:0002211] [HP:0002232] [HP:0002236] [HP:0002317] [HP:0002326] [HP:0002353] [HP:0002465] [HP:0002474] [HP:0002574] [HP:0002608] [HP:0002633] [HP:0002664] [HP:0002705] [HP:0002714] [HP:0002716] [HP:0002725] [HP:0002757] [HP:0002758] [HP:0002779] [HP:0002861] [HP:0002926] [HP:0003121] [HP:0003124] [HP:0003125] [HP:0003186] [HP:0003196] [HP:0003765] [HP:0003808] [HP:0004322] [HP:0004325] [HP:0004349] [HP:0004474] [HP:0004482] [HP:0005110] [HP:0005180] [HP:0005978] [HP:0006510] [HP:0006934] [HP:0006986] [HP:0007526] [HP:0007544] [HP:0007663] [HP:0007970] [HP:0008069] [HP:0008115] [HP:0008404] [HP:0008551] [HP:0008625] [HP:0008734] [HP:0009725] [HP:0009927] [HP:0009928] [HP:0009933] [HP:0010562] [HP:0010743] [HP:0010751] [HP:0010788] [HP:0010862] [HP:0010863] [HP:0011220] [HP:0011311] [HP:0011344] [HP:0011471] [HP:0011645] [HP:0011800] [HP:0011924] [HP:0011968] [HP:0012125] [HP:0012189] [HP:0012382] [HP:0012393] [HP:0012443] [HP:0012448] [HP:0012471] [HP:0012539] [HP:0012646] [HP:0012741] [HP:0012745] [HP:0012758] [HP:0030055] [HP:0030190] [HP:0030276] [HP:0030517] [HP:0032241] [HP:0032322] [HP:0040019] [HP:0040199] [HP:0100013] [HP:0100022] [HP:0100031] [HP:0100033] [HP:0100279] [HP:0100280] [HP:0100526] [HP:0100559] [HP:0100615] [HP:0100651] [HP:0100659] [HP:0100728] [HP:0100814] [MONDO:0000430] [MONDO:0000872] [MONDO:0002025] [MONDO:0002038] [MONDO:0002367] [MONDO:0002397] [MONDO:0002598] [MONDO:0002601] [MONDO:0002627] [MONDO:0002630] [MONDO:0002631] [MONDO:0002678] [MONDO:0002898] [MONDO:0002924] [MONDO:0003002] [MONDO:0003142] [MONDO:0003478] [MONDO:0003537] [MONDO:0003572] [MONDO:0003751] [MONDO:0004050] [MONDO:0004301] [MONDO:0005010] [MONDO:0005052] [MONDO:0005072] [MONDO:0005252] [MONDO:0005301] [MONDO:0005306] [MONDO:0005814] [MONDO:0006058] [MONDO:0007254] [MONDO:0007255] [MONDO:0007256] [MONDO:0007257] [MONDO:0007258] [MONDO:0007259] [MONDO:0007260] [MONDO:0007261] [MONDO:0007262] [MONDO:0007263] [MONDO:0007264] [MONDO:0007265] [MONDO:0007266] [MONDO:0007267] [MONDO:0007268] [MONDO:0007269] [MONDO:0007270] [MONDO:0007271] [MONDO:0007272] [MONDO:0007273] [MONDO:0007274] [MONDO:0007275] [MONDO:0007276] [MONDO:0007277] [MONDO:0007278] [MONDO:0007279] [MONDO:0007280] [MONDO:0007281] [MONDO:0007282] [MONDO:0007283] [MONDO:0007284] [MONDO:0007285] [MONDO:0007286] [MONDO:0007287] [MONDO:0007288] [MONDO:0007289] [MONDO:0007290] [MONDO:0007291] [MONDO:0007292] [MONDO:0007293] [MONDO:0007294] [MONDO:0007295] [MONDO:0007296] [MONDO:0007297] [MONDO:0007298] [MONDO:0007299] [MONDO:0007300] [MONDO:0007301] [MONDO:0007302] [MONDO:0007303] [MONDO:0007304] [MONDO:0007305] [MONDO:0007306] [MONDO:0007307] [MONDO:0007308] [MONDO:0007309] [MONDO:0007310] [MONDO:0007311] [MONDO:0007312] [MONDO:0007313] [MONDO:0007314] [MONDO:0007315] [MONDO:0007316] [MONDO:0007317] [MONDO:0007318] [MONDO:0007319] [MONDO:0007320] [MONDO:0007321] [MONDO:0007322] [MONDO:0007323] [MONDO:0007324] [MONDO:0007325] [MONDO:0007326] [MONDO:0007327] [MONDO:0007328] [MONDO:0007329] [MONDO:0007330] [MONDO:0007331] [MONDO:0007332] [MONDO:0007333] [MONDO:0007334] [MONDO:0007335] [MONDO:0007336] [MONDO:0007337] [MONDO:0007338] [MONDO:0007339] [MONDO:0007340] [MONDO:0007341] [MONDO:0007342] [MONDO:0007343] [MONDO:0007344] [MONDO:0007345] [MONDO:0007346] [MONDO:0007347] [MONDO:0007348] [MONDO:0007349] [MONDO:0007350] [MONDO:0007351] [MONDO:0007352] [MONDO:0007353] [MONDO:0007354] [MONDO:0007355] [MONDO:0007356] [MONDO:0007357] [MONDO:0007358] [MONDO:0007359] [MONDO:0007360] [MONDO:0007361] [MONDO:0007362] [MONDO:0007363] [MONDO:0007364] [MONDO:0007365] [MONDO:0007366] [MONDO:0007367] [MONDO:0007368] [MONDO:0007369] [MONDO:0007370] [MONDO:0007371] [MONDO:0007372] [MONDO:0007432] [MONDO:0007576] [MONDO:0015540] [MONDO:0016642] [MONDO:0016690] [MONDO:0016691] [MONDO:0016692] [MONDO:0016700] [MONDO:0016735] [MONDO:0017349] [MONDO:0017387] [MONDO:0018177] [MONDO:0019457] [MONDO:0019470] [MONDO:0019474] [MONDO:0020511] [MONDO:0020580] [MONDO:0020663] [MONDO:0044335] [MONDO:0100096] [MONDO:0100342] [NCIT:C115935] [NCIT:C177374] [NCIT:C200033] [NCIT:C3099] [NCIT:C4737] [NCIT:C4873] [Orphanet:124] [Orphanet:183500] [Orphanet:252202] [Orphanet:269] [Orphanet:3095] [Orphanet:399] [Orphanet:552] [Orphanet:654] [Orphanet:768] [Orphanet:811] [Orphanet:98892] [PATO:0000461] [UBERON:0000178] [UBERON:0000966] [UBERON:0000992] [UBERON:0002371] [UBERON:0002372] [UBERON:0003889] [UBERON:0005351] [UBERON:0012168] [UBERON:0013756]

Duo

0000001 0000004 0000005 0000006 0000007 0000010 0000011 0000012 0000014 0000015 0000016 0000017 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000043 0000044 0000045 0000046

Clear

Geographic variation of mutagenic exposures in kidney cancer genomes – filtered vcf files (Mutographs)

Geographic variation of mutagenic exposures in kidney cancer genomes – filtered vcf files (Mutographs)
Dataset EGAD00001012222
Geographic variation of mutagenic exposures in kidney cancer genomes – patient metadata files (Mutographs)

Geographic variation of mutagenic exposures in kidney cancer genomes – patient metadata files (Mutographs)
Dataset EGAD00001012223
Geographic variation of mutagenic exposures in kidney cancer genomes – copy number variants (Mutographs)

Geographic variation of mutagenic exposures in kidney cancer genomes – copy number variants (Mutographs)
Dataset EGAD00001013727
Characterising the evolutionary dynamics of cancer proliferation in single-cell clones with SPRINTER

Characterising the evolutionary dynamics of cancer proliferation in single-cell clones with SPRINTER
Dataset EGAD00001015411
McGill EMC Release 4 in tissue "venous blood" for cell type "B cell"

McGill EMC Release 4 in tissue "venous blood" for cell type "B cell"
Dataset EGAD00001001278
Epi-Tax targeted sequencing

Sequencing of 350 cancer genes in BC samples from patients treated with either Epirubicin or Paclitaxel monotherapy in the neoadjuvant setting.
Dataset EGAD00001000812
McGill EMC Release 4 in tissue "fat pad" for cell type "fat cell"

McGill EMC Release 4 in tissue "fat pad" for cell type "fat cell"
Dataset EGAD00001001277
McGill EMC Release 4 in tissue "venous blood" for cell type "T cell"

McGill EMC Release 4 in tissue "venous blood" for cell type "T cell"
Dataset EGAD00001001283
Amplicon–Based Metagenomic Analysis.

Amplicon-based fungal metagenomic sequencing for the identification of fungal species in brain tissue from Alzheimer's disease. The study consists in 14 samples, sequenced using Illumina's paired-end technology.
Dataset EGAD00001003196
Dataset for "Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability"

Dataset for "Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability"
Dataset EGAD00001000691

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