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blog dac dataset documentation study

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Study type

affected sib pairs aggregate genomic data cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical trial cohort collection control set controlled trial copy number variation (cnv) cross-sectional epigenetics eqtl exome sequencing family full transcriptome sequencing gene regulation study interventional longitudinal longitudinal cohort marker discovery metagenomics metastasis methods development nested case-control observational other parent-offspring trios population genomics prospective randomized controlled clinical trial resequencing rna sequencing rnaseq sequencing single cell analysis single cell rna sequence snp array analysis targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal twin virus capture sequencing whole genome sequencing whole-genome bisulfite sequencing

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

454 gs junior ab 5500 genetic analyzer ab 5500xl genetic analyzer ab genechip scanner 3000 7g system clariom s ab solid 4 system ab solid system ab solid system 3.0 affymetrics axiom snp array 2.0 affymetrix affymetrix 6.0 affymetrix cytoscan hd affymetrix expression array affymetrix genechip mirna 4.0 affymetrix human transcriptome array 2.0 affymetrix oncoscan, affymetrix snp6.0, affymetrix cytocan hd affymetrix snp 6.0 affymetrix, thermo fisher scientific affymetrix_snp6 affymetrix_snp6- beadarray complete genomics dnbseq-g400 epic array (illumina) epic_850k genechip hta 2.0 genechip human genome u133 plus 2.0 array genome-wide human snp array 6.0 or the cytoscan hd array gridion hiseq x five hiseq x ten human clariom d arrays human genome u219 array plate humanmethylation450 humanmethylation450k bead chip - genome studio humanomni1 quad beadchip illlimuna epic 450 k illumina illumina 450k illumina 670k (custom illumina human660w-quad) illumina 850k illumina 850k epic array illumina cytosnp illumina epic 450k beadchip assay illumina epic array illumina epic v2.0 illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina global screening array v2.0 illumina hiscansq illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina ht12.4 illumina humancoreexome-24 array illumina humanexome-12v1_a illumina humanmethylation 450k illumina humanomni2.5 illumina infinium humanmethylation epic beadchip illumina infinium humanmethylation450 (450k) illumina infinium humanmethylation450 beadchip illumina infinium methylationepic array illumina infinium methylationepic beadchip illumina infinium methylationepic beadchip (850 k) illumina infiniumomniexpressexome-8 illumina methylationepic beadchip array illumina miseq illumina novaseq 6000 illumina novaseq x illumina novaseq x plus illumina omni express beadchip illumina_humanmethylation450 ilumina infinium humanmethylationepic beadchip array infinium humanmethylation450 beadchip infinium methylation epic beadchip infinium methylationepic beadchip ion torrent pgm ion torrent proton ion torrent s5 ion torrent s5 xl mgiseq-2000rs minion miseq na nanostring expression immunology panel nanostring ncounterâ® pancancer io 360â„¢ nextseq 1000 nextseq 2000 nextseq 500 nextseq 550 pacbio rs pacbio rs ii promethion qexactive plus sequel snp6 unspecified

Phenotypes

CL:0000786 CL:0000945 DOID:0080531 DOID:0080534 DOID:0081004 DOID:0081247 EFO:0000096 EFO:0000174 EFO:0000209 EFO:0000211 EFO:0000220 EFO:0000239 EFO:0000248 EFO:0000272 EFO:0000280 EFO:0000296 EFO:0000311 EFO:0000322 EFO:0000349 EFO:0000350 EFO:0000403 EFO:0000437 EFO:0000478 EFO:0000502 EFO:0000519 EFO:0000571 EFO:0000574 EFO:0000621 EFO:0000622 EFO:0000623 EFO:0000624 EFO:0000625 EFO:0000632 EFO:0000637 EFO:0000681 EFO:0000691 EFO:0000702 EFO:0000708 EFO:0000761 EFO:0000980 EFO:0001378 EFO:0002618 EFO:0002787 EFO:0002824 EFO:0002916 EFO:0002918 EFO:0002939 EFO:0003942 EFO:0005406 EFO:0005537 EFO:0005543 EFO:0005699 EFO:0005842 EFO:0005922 EFO:0006545 EFO:0007365 EFO:0008524 EFO:0008913 EFO:0008985 EFO:0008986 EFO:0008987 EFO:0008988 EFO:0008989 EFO:0008990 EFO:0008991 EFO:0008992 EFO:0008993 EFO:0009119 EFO:0009375 EFO:0009654 EFO:1000042 EFO:1000075 EFO:1000128 EFO:1000231 EFO:1000238 EFO:1000288 EFO:1000292 EFO:1000327 EFO:1000348 EFO:1000349 EFO:1000360 EFO:1000453 EFO:1000796 EFO:1001469 EFO:1001514 EFO:1001515 EFO:1001830 EFO:1001958 HP:0012189 HP:0100728 MONDO:0002598 MONDO:0002627 MONDO:0002630 MONDO:0002631 MONDO:0003537 MONDO:0004050 MONDO:0004301 MONDO:0004950 MONDO:0004952 MONDO:0005005 MONDO:0005062 MONDO:0005072 MONDO:0005184 MONDO:0006058 MONDO:0008903 MONDO:0015760 MONDO:0016698 MONDO:0016700 MONDO:0017043 MONDO:0017590 MONDO:0018177 MONDO:0018874 MONDO:0018905 MONDO:0018906 MONDO:0018908 MONDO:0019087 MONDO:0020511 MONDO:0021335 MONDO:0100342 NCIT:C120224 NCIT:C121793 NCIT:C121804 NCIT:C177374 NCIT:C178466 NCIT:C200033 NCIT:C2945 NCIT:C3107 NCIT:C3359 NCIT:C3400 NCIT:C3468 NCIT:C3745 NCIT:C3749 NCIT:C3750 NCIT:C4244 NCIT:C4737 NCIT:C4817 NCIT:C6481 NCIT:C6970 NCIT:C8094 NCIT:C8971 NCIT:C9145 Orphanet:544 Orphanet:654 PATO:0000461 UBERON:0000178 UBERON:0000966 UBERON:0001134 UBERON:0002371

Duo

0000001 0000004 0000005 0000006 0000007 0000011 0000012 0000014 0000015 0000016 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000043 0000044 0000045 0000046

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Neuroblastoma deep-sequencing dataset part 1

Dataset including paired tumor-normal whole-genome deep-sequenced samples from 18 neuroblastoma patients (part1 of a total of 36 patients).
Dataset EGAD00001010059
Neuroblastoma deep-sequencing dataset part2

Dataset including paired tumor-normal whole-genome deep-sequenced samples from 18 neuroblastoma patients (part 2 of a total of 36 patients).
Dataset EGAD00001010063
Whole genome sequencing data of high-grade serous ovarian cancer samples (set 4)

Whole genome sequencing data of 7 high-grade serous carcinoma (HGSC) patients (32 samples) sequenced with HiSeq X Ten.
Dataset EGAD00001010066
RNASeq read files of glioblastoma PDX samples

This dataset contains 46 fastq files of paired-end RNA sequencing of an Illumina®️ TrueSeq stranded mRNA library of 23 glioblasoma PDX samples.
Dataset EGAD00001010196
RCRF release 1

exome data from leiomyosarcoma, large cell neuroendocrine carcinoma, and clear cell sarcoma
Dataset EGAD00001010197
RCRF release 1

Transcriptome sequencing from the Rare Cancer Research Foundation: leiomyosarcoma, large cell neuroendocrine carcinoma, clear cell carcinoma
Dataset EGAD00001010198
RCRF release 1

Rare Cancer Research Foundation: leiomyosarcoma, large cell neuroendorcrine carcinoma, clear cell carcinoma
Dataset EGAD00001010199
Whole genome sequencing data of high-grade serous ovarian cancer samples (set 6)

Whole genome sequencing data of 31 high-grade serous carcinoma (HGSC) patients (101 samples) sequenced with HiSeq X Ten and BGISEQ-500
Dataset EGAD00001010202
10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0187_001A

10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0187_001A for Follicular lymphoma patient sample TFRIPAIR10_FL
Dataset EGAD00001010222
Spatial TCR sequencing in breast cancer

Spatial characterization by TCR sequencing in tumor core and matched stroma in seven cases of triple negative breast cancer.
Dataset EGAD00001010203

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