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• Oliocapture sequencing libraries from the study "Histological Transformation and Progression in Follicular Lymphoma: a Clonal Evolution Study".

  Oliocapture sequencing libraries from the study "Histological Transformation and Progression in Follicular Lymphoma: a Clonal Evolution Study". These are sequencing libraries from the extension cohort of 277 patients. Specifically, there are 402 tumor libraries and 82 normal libraries.

  Dataset EGAD00001002898

• Complete Metagenomics from feces

  Complete Microbiome Metagenomics from feces of 461 IBD patients; The sequencer used was the Illumina HiSeq 2000 with a paired end reads design, reflected in the 2 FastQ format files per sample.

  Dataset EGAD00001004194

• Understanding population genetics and patterns of genome-wide heterozygosity in a sample of the Croatian isolated populations (ESGIDalmatians)

  Using high-throughput sequencing technologies and analytical tools, we conduct an exome sequencing study that will help understand the population genetics of a Croatian island isolate, in a sample of 200 subjects from the Adriatic island of Vis who were selected to reflect islanders with at least four known ancestors in grandparental line who are original islanders.

  Dataset EGAD00001001387

• Paired-end Whole Exome-seq analysis of the Hypermutation and Malignant Progression in Low-grade Glioma Patients

  113 DNA samples were derived from the tumors of the low grade glioma patients and sequenced using Illumina WES (exome seq) paired-end technology. Dataset contains 113 BAM files aligned to hg19 using BWA v.0.5.9. After mapping duplicated reads were removed, reads were re-aligned around InDels and read base quality score was re-calibrated.

  Dataset EGAD00001005386

• RNA-sequencing from duodenal bipsies of Celiac disease patients

  Total RNA was extracted from the PaxFPE biopsy specimens (n = 116)

  Study EGAS50000000337

• Genomic profiling of two pathogenic germline truncating variants of BRCA2 confer different haploinsufficiency phenotype

  Observation of the loss of heterozygosity of BRCA2

  Study EGAS50000000613

• Haemoglobin_E_beta_thalassaemia_in_a_patient_group_from_Sri_Lanka

  Exome sequencing of 32 patient samples from Sri Lanka with the condition haemoglobin E beta thalassaemia

  Study EGAS00001000626

• MIBS MGS

  Metagenomic sequencing of the human gut in Maastricht IBS studies, cases and controls.

  Study EGAS00001001924

• RNA-seq of human embryonic heart, lung, and cerebellum

  Characterization of cell types in the human embronic heart, lung, and cerebellum.

  Study EGAS00001004375

• BAM files ChIP-Seq

  Data from the paper Context-specific Effects of TGFβ/SMAD3 in Cancer Are Modulated by the Epigenome. Tufegdzic et al, Cell Reports 2015

  Dataset EGAD00001001669