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Study type

affected sib pairs aggregate genomic data atac sequencing cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical genetic testing clinical trial cohort collection control set controlled trial copy number variation (cnv) cross-sectional epigenetics eqtl exome sequencing family forensic or paleo-genomics full transcriptome sequencing gene regulation study genotype genotype/expression gwas individual-level genomic data interventional longitudinal longitudinal cohort marker discovery meta-analysis metagenomics metastasis methods development nested case-control nuclear families observational other parent-offspring parent-offspring trios partial factorial randomized pooled clone sequencing population population genomics prospective randomized randomized controlled clinical trial reference set resequencing rna sequencing rnaseq sequencing single cell analysis single cell rna sequencing synthetic genomics targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal whole genome sequencing xenograft

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

454 gs flx titanium ab 3730xl genetic analyzer ab 5500 genetic analyzer ab 5500xl genetic analyzer ab 5500xl-w genetic analysis system ab solid 4 system ab solid system abi_solid affymetrics_snp_6.0- affymetrix 6.0 array affymetrix human genome u133 plus 2.0 array affymetrix snp 6.0 affymetrix snp6.0 affymetrix_snp6- agilent aperio aperio image - h&e stained tissue_section beadarray bgiseq-500 complete genomics cytoscan dnbseq-t7 epic beadchip (illumina, san diego, ca) exiqon 7th generation mircury lna microrna microarray system genechip human mapping 250k nspi genome-wide human snp array 6.0 - thermo fisher scientific gridion gsa-md v3 h and e image hiseq x five hiseq x ten illumina illumina 15k illumina 2.5m illumina 450k illumina 850k illumina cytosnp 12 bead array illumina epic 450k beadchip assay illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina hiscan illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2000;illumina illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina ht 12 illumina humanexome array illumina humanmethylationepic v1 illumina humanwg-6 illumina humanwg-6 version 3 or illumina humanht-12 expression bead chip, combined on identical nucleotide universal identifiers. illumina infinium human global screening array gsamd-24v2-0_20024620_a1 beadchip illumina infinium humanmethylation450k illumina infinium methylationepic 850k illumina infinium methylationepic beadchip (850 k) illumina methylationepic array illumina methylationepic beadchip arrays illumina miseq illumina novaseq 6000 illumina novaseq x illumina novaseq x plus illumina oncoarray illuminahuman awg-6 and ht12 illuminahuman ht12 infinium cytosnp-850k v1.4 bead chips array, illumina infinium methylationepic beadchip infinium methylationepic beadchip array infinium methylationepic v2.0 beadchip ion genestudio s5 ion genestudio s5 prime ion torrent pgm ion torrent proton ion torrent s5 ion torrent s5 xl life tech - solid mgiseq-2000rs minion miseq nanostring nanostring cancer immune nanostring cancer pathway nanostring ncounterâ® pancancer io 360â„¢ nanostring panel nanostring technology nextseq 2000 nextseq 500 nextseq 550 novaseq 6000 oligonucleotide beads of humanht-12 v4 r2 expression beadchips (illumina) oncoscan pacbio rs pacbio rs ii promethion qexactive plus sequel sequel ii snp array thermo orbitrap tribrid mass spectrometer unspecified

Phenotypes

[CL:0000038] [CL:0000050] [CL:0000236] [CL:0000499] [CL:0000523] [CL:0000557] [CL:0000576] [CL:0000786] [CL:0000788] [CL:0000844] [CL:0000893] [CL:0000970] [CL:0000972] [CL:0001024] [CL:0001059] [CL:0002324] [CL:0002326] [CL:0002420] [CL:0002489] [CL:0002555] [CL:0010004] [CL:2000006] [EFO:0000094] [EFO:0000174] [EFO:0000182] [EFO:0000183] [EFO:0000196] [EFO:0000209] [EFO:0000220] [EFO:0000222] [EFO:0000228] [EFO:0000239] [EFO:0000248] [EFO:0000292] [EFO:0000305] [EFO:0000308] [EFO:0000309] [EFO:0000310] [EFO:0000311] [EFO:0000312] [EFO:0000313] [EFO:0000314] [EFO:0000315] [EFO:0000316] [EFO:0000317] [EFO:0000318] [EFO:0000319] [EFO:0000320] [EFO:0000321] [EFO:0000322] [EFO:0000323] [EFO:0000324] [EFO:0000325] [EFO:0000326] [EFO:0000327] [EFO:0000328] [EFO:0000329] [EFO:0000330] [EFO:0000331] [EFO:0000332] [EFO:0000333] [EFO:0000334] [EFO:0000335] [EFO:0000336] [EFO:0000337] [EFO:0000338] [EFO:0000339] [EFO:0000340] [EFO:0000341] [EFO:0000342] [EFO:0000343] [EFO:0000344] [EFO:0000345] [EFO:0000346] [EFO:0000347] [EFO:0000348] [EFO:0000349] [EFO:0000350] [EFO:0000351] [EFO:0000352] [EFO:0000353] [EFO:0000354] [EFO:0000355] [EFO:0000356] [EFO:0000357] [EFO:0000358] [EFO:0000359] [EFO:0000360] [EFO:0000361] [EFO:0000362] [EFO:0000363] [EFO:0000364] [EFO:0000365] [EFO:0000366] [EFO:0000367] [EFO:0000368] [EFO:0000369] [EFO:0000370] [EFO:0000371] [EFO:0000372] [EFO:0000373] [EFO:0000374] [EFO:0000402] [EFO:0000403] [EFO:0000437] [EFO:0000502] [EFO:0000503] [EFO:0000519] [EFO:0000571] [EFO:0000616] [EFO:0000621] [EFO:0000637] [EFO:0000641] [EFO:0000681] [EFO:0000691] [EFO:0000693] [EFO:0000702] [EFO:0000708] [EFO:0000730] [EFO:0000756] [EFO:0000760] [EFO:0000761] [EFO:0000762] [EFO:0000848] [EFO:0000869] [EFO:0000887] [EFO:0000934] [EFO:0000973] [EFO:0000980] [EFO:0001071] [EFO:0001075] [EFO:0001376] [EFO:0001378] [EFO:0001461] [EFO:0001639] [EFO:0001663] [EFO:0002394] [EFO:0002422] [EFO:0002424] [EFO:0002618] [EFO:0002787] [EFO:0002793] [EFO:0002884] [EFO:0002885] [EFO:0002886] [EFO:0002887] [EFO:0002888] [EFO:0002889] [EFO:0002890] [EFO:0002891] [EFO:0002892] [EFO:0002916] [EFO:0002918] [EFO:0002939] [EFO:0003032] [EFO:0003060] [EFO:0003094] [EFO:0003137] [EFO:0003825] [EFO:0003897] [EFO:0003942] [EFO:0004422] [EFO:0004708] [EFO:0005235] [EFO:0005537] [EFO:0005543] [EFO:0005699] [EFO:0005701] [EFO:0005842] [EFO:0005844] [EFO:0006460] [EFO:0006545] [EFO:0006852] [EFO:0007143] [EFO:0007336] [EFO:0007365] [EFO:0007483] [EFO:0008498] [EFO:0008524] [EFO:0009052] [EFO:0009119] [EFO:0009120] [EFO:0009121] [EFO:0009375] [EFO:0009443] [EFO:0009654] [EFO:0009744] [EFO:0009907] [EFO:1000028] [EFO:1000042] [EFO:1000043] [EFO:1000069] [EFO:1000075] [EFO:1000101] [EFO:1000128] [EFO:1000138] [EFO:1000139] [EFO:1000144] [EFO:1000149] [EFO:1000231] [EFO:1000238] [EFO:1000288] [EFO:1000292] [EFO:1000307] [EFO:1000318] [EFO:1000348] [EFO:1000349] [EFO:1000360] [EFO:1000414] [EFO:1000416] [EFO:1000429] [EFO:1000453] [EFO:1000490] [EFO:1000646] [EFO:1000796] [EFO:1001038] [EFO:1001100] [EFO:1001230] [EFO:1001480] [EFO:1001514] [EFO:1001515] [EFO:1001830] [EFO:1001938] [EFO:1001946] [EFO:1001950] [EFO:1001951] [EFO:1001956] [EFO:1001958] [EFO:1001963] [EFO:1002008] [HP:0002716] [HP:0100880] [MONDO:0000430] [MONDO:0001056] [MONDO:0002397] [MONDO:0002601] [MONDO:0002627] [MONDO:0002630] [MONDO:0002631] [MONDO:0002678] [MONDO:0002924] [MONDO:0003002] [MONDO:0003142] [MONDO:0003537] [MONDO:0003572] [MONDO:0003751] [MONDO:0004952] [MONDO:0005062] [MONDO:0005575] [MONDO:0006058] [MONDO:0007254] [MONDO:0007255] [MONDO:0007256] [MONDO:0007257] [MONDO:0007258] [MONDO:0007259] [MONDO:0007260] [MONDO:0007261] [MONDO:0007262] [MONDO:0007263] [MONDO:0007264] [MONDO:0007265] [MONDO:0007266] [MONDO:0007267] [MONDO:0007268] [MONDO:0007269] [MONDO:0007270] [MONDO:0007271] [MONDO:0007272] [MONDO:0007273] [MONDO:0007274] [MONDO:0007275] [MONDO:0007276] [MONDO:0007277] [MONDO:0007278] [MONDO:0007279] [MONDO:0007280] [MONDO:0007281] [MONDO:0007282] [MONDO:0007283] [MONDO:0007284] [MONDO:0007285] [MONDO:0007286] [MONDO:0007287] [MONDO:0007288] [MONDO:0007289] [MONDO:0007290] [MONDO:0007291] [MONDO:0007292] [MONDO:0007293] [MONDO:0007294] [MONDO:0007295] [MONDO:0007296] [MONDO:0007297] [MONDO:0007298] [MONDO:0007299] [MONDO:0007300] [MONDO:0007301] [MONDO:0007302] [MONDO:0007303] [MONDO:0007304] [MONDO:0007305] [MONDO:0007306] [MONDO:0007307] [MONDO:0007308] [MONDO:0007309] [MONDO:0007310] [MONDO:0007311] [MONDO:0007312] [MONDO:0007313] [MONDO:0007314] [MONDO:0007315] [MONDO:0007316] [MONDO:0007317] [MONDO:0007318] [MONDO:0007319] [MONDO:0007320] [MONDO:0007321] [MONDO:0007322] [MONDO:0007323] [MONDO:0007324] [MONDO:0007325] [MONDO:0007326] [MONDO:0007327] [MONDO:0007328] [MONDO:0007329] [MONDO:0007330] [MONDO:0007331] [MONDO:0007332] [MONDO:0007333] [MONDO:0007334] [MONDO:0007335] [MONDO:0007336] [MONDO:0007337] [MONDO:0007338] [MONDO:0007339] [MONDO:0007340] [MONDO:0007341] [MONDO:0007342] [MONDO:0007343] [MONDO:0007344] [MONDO:0007345] [MONDO:0007346] [MONDO:0007347] [MONDO:0007348] [MONDO:0007349] [MONDO:0007350] [MONDO:0007351] [MONDO:0007352] [MONDO:0007353] [MONDO:0007354] [MONDO:0007355] [MONDO:0007356] [MONDO:0007357] [MONDO:0007358] [MONDO:0007359] [MONDO:0007360] [MONDO:0007361] [MONDO:0007362] [MONDO:0007363] [MONDO:0007364] [MONDO:0007365] [MONDO:0007366] [MONDO:0007367] [MONDO:0007368] [MONDO:0007369] [MONDO:0007370] [MONDO:0007371] [MONDO:0007372] [MONDO:0008170] [MONDO:0008903] [MONDO:0013296] [MONDO:0015760] [MONDO:0016690] [MONDO:0016691] [MONDO:0016692] [MONDO:0016700] [MONDO:0016735] [MONDO:0017349] [MONDO:0017387] [MONDO:0018177] [MONDO:0018874] [MONDO:0018905] [MONDO:0018908] [MONDO:0019457] [MONDO:0019470] [MONDO:0019474] [MONDO:0020511] [MONDO:0020580] [MONDO:0020663] [MONDO:0044335] [NCIT:C200033] [NCIT:C25588] [NCIT:C4737] [NCIT:C4912] [NCIT:C7899] [Orphanet:654] [PATO:0000461] [UBERON:0000178] [UBERON:0000310] [UBERON:0000397] [UBERON:0000992] [UBERON:0001134] [UBERON:0001156] [UBERON:0001159] [UBERON:0001968] [UBERON:0002046] [UBERON:0002328] [UBERON:0002371] [UBERON:0002372] [UBERON:0003889] [UBERON:0005351] [UBERON:0010393] [UBERON:0012168] [UBERON:0013756]

Duo

0000001 0000004 0000005 0000006 0000007 0000010 0000011 0000012 0000014 0000015 0000016 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000043 0000044 0000045 0000046

Clear

Genome and transcriptome sequence data from a squamous cell carcinoma of the lung patient

Genome and transcriptome sequence data from a squamous cell carcinoma of the lung patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003011
Genome and transcriptome sequence data from a metastatic adenocarcinoma of the rectum patient

Genome and transcriptome sequence data from a metastatic adenocarcinoma of the rectum patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003012
Genome and transcriptome sequence data from a metastatic gastric cancer patient

Genome and transcriptome sequence data from a metastatic gastric cancer patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003013
Genome and transcriptome sequence data from a metastatic colon cancer patient

Genome and transcriptome sequence data from a metastatic colon cancer patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003014
Genome and transcriptome sequence data from a metastatic breast cancer patient

Genome and transcriptome sequence data from a metastatic breast cancer patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003015
Genome and transcriptome sequence data from a metastatic ductal carcinoma of the breast patient

Genome and transcriptome sequence data from a metastatic ductal carcinoma of the breast patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003016
Genome and transcriptome sequence data from a metastatic large cell neuroendocrine tumour of the lung patient

Genome and transcriptome sequence data from a metastatic large cell neuroendocrine tumour of the lung patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003017
Genome and transcriptome sequence data from a metastatic clear cell sarcoma patient

Genome and transcriptome sequence data from a metastatic clear cell sarcoma patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003018
Genome and transcriptome sequence data from a metastatic uveal melanoma patient

Genome and transcriptome sequence data from a metastatic uveal melanoma patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003019
Genome and transcriptome sequence data from a low grade serous ovarian cancer patient

Genome and transcriptome sequence data from a low grade serous ovarian cancer patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003020

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