12216 results for "cancer rna-seq"

in 14.22 milliseconds.

• RNA sequencing data pre-treatment and post-treatment for NABUCCO cohort 1

  NABUCCO cohort 1 sequencing data. The dataset includes RNA sequencing pre-treatment on tumor samples (n=18) and RNA sequencing post-treatment on bladder tumor samples (n=18).

  Dataset EGAD00001006855

• Pilocytic Astrocytoma RNA sequencing

  This dataset contains RNA sequencing samples from the Duesseldorf/LIsbon pilocytic astrocytoma cohort which was profiled using Proteogenomics (RNA Sequencing, proteomics and methylation). There are 48 samples which were sequenced using paired-end sequencing at the University Hopstial Dusseldorf.

  Dataset EGAD00001009053

• Single-cell multi-omics and mtDNA genotyping of human peripheral blood cells

  In this study, we characterize human peripheral blood cells using mitochondrial single-cell ATAC-seq (mtscATAC-seq), which simultaneously profiles mitochondrial genomes and chromatin accessibility at single-cell resolution. This submission includes PBMCs from one healthy pediatric donor and one 80-year-old patient diagnosed with mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome.

  Study EGAS50000001020

• Whole genome sequencing of adult glioblastoma nuclei

  Nuclei were extracted from three primary adult glioblastoma samples and processed for scATAC-seq, and residual nuclei left over from these same samples were used to extract DNA and processed and sequenced for WGS. This WGS data was then used to cross-validate assessment of large-scale copy number alterations with scATAC-seq using the Copy-scAT tool.

  Study EGAS00001005256

• ChIP-seq bulk

  This dataset gather ChIP-seq data produced by immunoprecipitating CTCF factor in own laboratory in MM.1S cell line in EtOH and Dex conditions. It also gather ChIP-seq dataset produced by external laboratory (Active Motif) for H3K27ac mark and GR transcription factor in same cell line and conditions ( MM.1S ETOH/Dex)

  Dataset EGAD00001011136

• RNA sequencing from patient-derived intestinal organoids

  uman duodenal tissues for establishing organoid cultures used in this study were sourced from de-identified surgical specimens (n = 3) of the duodenum obtained from patients who had undergone biopsy procedures unrelated to CeD at Tampere University Hospital. The protocol was approved by the Ethics Committee of Tampere University Hospital, Tampere, Finland (ETL code R18082). RNA from the duodenal organoids was isolated using an RNeasy Kit (Qiagen, Hilden, Germany) following the manufacturer’s instructions. RNA purity and concentration were measured using a NanoDrop One spectrophotometer (NanoDrop Technologies, Wilmington, Delaware, USA). Preparation of the RNA library and transcriptome sequencing was conducted by Novogene Co., LTD (Cambridge, UK). Messenger RNA was purified from total RNA using polyA selection and subjected to library construction. Sequencing was performed on an Illumina platform, and 150 bp paired-end reads were generated.

  Dataset EGAD50000000492

• Reference epigenome CKD24_C_Podo_mRNA-Seq data generated from KEP study

  A CKD24_C_Podo_mRNA-Seq paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003482

• Reference epigenome CKD25_C_Podo_mRNA-Seq data generated from KEP study

  A CKD25_C_Podo_mRNA-Seq paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003483

• Reference epigenome OB57_D_PreA_mRNA-Seq data generated from KEP study

  A OB57_D_PreA_mRNA-Seq paired end data for Preadipocyte(fat)

  Dataset EGAD00001003487

• Reference epigenome OB56_N_PreA_smRNA-Seq data generated from KEP study

  A OB56_N_PreA_smRNA-Seq single end data for Preadipocytes(fat)

  Dataset EGAD00001003495

• Reference epigenome OB57_D_PreA_smRNA-Seq data generated from KEP study

  A OB57_D_PreA_smRNA-Seq single end data for Preadipocyte(fat)

  Dataset EGAD00001003496

• Reference epigenome CKD24_C_Podo_smRNA-Seq data generated from KEP study

  A CKD24_C_Podo_smRNA-Seq single end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003498

• Reference epigenome CKD25_C_Podo_smRNA-Seq data generated from KEP study

  A CKD25_C_Podo_smRNA-Seq single end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003499

• ATAC-seq for placental and buffycoat cells.

  We performed ATAC-seq experiments using 2 placental samples and 2 buffycoat samples.

  Dataset EGAD00001004291

• Reference epigenome SMC01 h3k4me3 ChIP-Seq data generated from KEP study

  SMC01 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007311

• Reference epigenome Fat-adipocyte03 mRNA-Seq data generated from KEP study

  Fat-adipocyte03 mRNA-Seq paired end data

  Dataset EGAD00001007157

• Reference epigenome Fat-adipocyte04 mRNA-Seq data generated from KEP study

  Fat-adipocyte04 mRNA-Seq paired end data

  Dataset EGAD00001007158

• Reference epigenome Fat-adipocyte05 mRNA-Seq data generated from KEP study

  Fat-adipocyte05 mRNA-Seq paired end data

  Dataset EGAD00001007159

• Reference epigenome Pancreas-Islet06 mRNA-Seq data generated from KEP study

  Pancreas-Islet06 mRNA-Seq paired end data

  Dataset EGAD00001007166

• Reference epigenome Pancreas-Islet07 mRNA-Seq data generated from KEP study

  Pancreas-Islet07 mRNA-Seq paired end data

  Dataset EGAD00001007167

• Reference epigenome Pancreas-Islet08 mRNA-Seq data generated from KEP study

  Pancreas-Islet08 mRNA-Seq paired end data

  Dataset EGAD00001007168

• Reference epigenome SMC05 h3k9me3 ChIP-Seq data generated from KEP study

  SMC05 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007336

• Reference epigenome ADMSC05 h3k27me3 ChIP-Seq data generated from KEP study

  ADMSC05 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007375

• Reference epigenome Islet-derived_MSC06 mRNA-Seq data generated from KEP study

  Islet-derived_MSC06 mRNA-Seq paired end data

  Dataset EGAD00001007878

• Dataset for B-ALL scRNA-seq

  10x Genomics 5' library scRNA-seq data for 85 B-ALL patients with different subtypes

  Dataset EGAD00001011327