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11791 results for "cancer rna-seq"

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Type

blog dac dataset documentation study

Repository

dbgap ega jga

Federated ega

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Study type

affected sib pairs aggregate genomic data amplicon sequencing atac sequencing cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical genetic testing clinical trial cohort collection control set controlled trial copy number variation (cnv) cross-sectional epigenetics eqtl exome sequencing extended pedigrees family forensic or paleo-genomics full transcriptome sequencing gene regulation study genotype genotype/expression gwas individual-level genomic data interventional longitudinal longitudinal cohort marker discovery mendelian meta-analysis metagenomics metastasis methods development nested case-control observational other parent-offspring trios partial factorial randomized phase iii pooled clone sequencing population population genomics prospective randomized randomized controlled clinical trial reference set resequencing rna sequencing rnaseq sequencing single cell analysis single cell rna sequence single cell rna sequencing stem cell lines synthetic genomics targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal whole genome sequencing xenograft

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

454 gs flx titanium ab 3730xl genetic analyzer ab 5500 genetic analyzer ab 5500xl genetic analyzer ab 5500xl-w genetic analysis system ab genechip scanner 3000 7g system clariom s ab solid 4 system ab solid system affymetrics_snp_6.0- affymetrix 6.0 array affymetrix genechip scanner 3000 7g affymetrix hg_u133_+2 affymetrix human genome u133 plus 2.0 array affymetrix snp 6.0 affymetrix snp6.0 affymetrix_snp6- agilent agilent mirna microarrays agilent sureselectxt human methyl. seq aperio aperio image - h&e stained tissue_section beadarray bgiseq-500 complete genomics cytoscan dnbseq-g400 dnbseq-t7 epic beadchip (illumina, san diego, ca) exiqon 7th generation mircury lna microrna microarray system genechip human mapping 250k nspi genome-wide human snp array 6.0 - thermo fisher scientific gridion gsa-md v3 h and e image hiseq x five hiseq x ten illlumina ht12 v3 illumina illumina 15k illumina 2.5m illumina 450k illumina 850k illumina cytosnp 12 bead array illumina epic 450k beadchip assay illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina hiscan illumina hiscansq illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2000;illumina illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina hiseq4000 illumina ht 12 illumina humanexome array illumina humanmethylationepic v1 illumina humanwg-6 illumina humanwg-6 version 3 or illumina humanht-12 expression bead chip, combined on identical nucleotide universal identifiers. illumina infinium global screening array-24 illumina infinium human global screening array gsamd-24v2-0_20024620_a1 beadchip illumina infinium humanmethylation450k illumina infinium methylationepic beadchip (850 k) illumina methylationepic array illumina methylationepic beadchip arrays illumina miniseq illumina miseq illumina nextseq-500 illumina novaseq 6000 illumina novaseq x illumina novaseq x plus illumina oncoarray illumina_humanht-12v4 illuminahuman awg-6 and ht12 illuminahuman ht12 infinium cytosnp-850k v1.4 bead chips array, illumina infinium methylationepic beadchip infinium methylationepic beadchip array infinium methylationepic v2.0 beadchip ion genestudio s5 ion genestudio s5 prime ion torrent pgm ion torrent proton ion torrent s5 ion torrent s5 xl life tech - solid medip-seq mgiseq-2000rs minion miseq nanostring nanostring cancer immune nanostring cancer pathway nanostring ncounter nanostring ncounter max/flex nanostring ncounterâ® pancancer io 360â„¢ nanostring panel nanostring technology nextseq 1000 nextseq 2000 nextseq 500 nextseq 550 novaseq 6000 oligonucleotide beads of humanht-12 v4 r2 expression beadchips (illumina) oncoscan pacbio rs pacbio rs ii paired rna-sequencing data promethion qexactive plus revio rnaseq sequel sequel ii single cell rna-seq smartseq2_adapted snp array thermo orbitrap tribrid mass spectrometer unspecified

Phenotypes

[CHEBI:33699] [CL:0000037] [CL:0000038] [CL:0000041] [CL:0000049] [CL:0000050] [CL:0000051] [CL:0000057] [CL:0000092] [CL:0000096] [CL:0000235] [CL:0000236] [CL:0000499] [CL:0000523] [CL:0000557] [CL:0000560] [CL:0000576] [CL:0000580] [CL:0000582] [CL:0000624] [CL:0000625] [CL:0000765] [CL:0000786] [CL:0000787] [CL:0000788] [CL:0000809] [CL:0000810] [CL:0000811] [CL:0000815] [CL:0000817] [CL:0000837] [CL:0000840] [CL:0000841] [CL:0000842] [CL:0000844] [CL:0000863] [CL:0000890] [CL:0000893] [CL:0000896] [CL:0000904] [CL:0000905] [CL:0000907] [CL:0000913] [CL:0000939] [CL:0000945] [CL:0000970] [CL:0000972] [CL:0000990] [CL:0001024] [CL:0001059] [CL:0001062] [CL:0001066] [CL:0002015] [CL:0002026] [CL:0002057] [CL:0002092] [CL:0002102] [CL:0002324] [CL:0002326] [CL:0002420] [CL:0002489] [CL:0002540] [CL:0002555] [CL:0002618] [CL:0002619] [CL:0010004] [CL:0011114] [CL:2000006] [DOID:0050756] [EFO:0000094] [EFO:0000095] [EFO:0000174] [EFO:0000182] [EFO:0000183] [EFO:0000196] [EFO:0000198] [EFO:0000209] [EFO:0000220] [EFO:0000222] [EFO:0000228] [EFO:0000239] [EFO:0000248] [EFO:0000272] [EFO:0000280] [EFO:0000285] [EFO:0000292] [EFO:0000305] [EFO:0000308] [EFO:0000309] [EFO:0000310] [EFO:0000311] [EFO:0000312] [EFO:0000313] [EFO:0000314] [EFO:0000315] [EFO:0000316] [EFO:0000317] [EFO:0000318] [EFO:0000319] [EFO:0000320] [EFO:0000321] [EFO:0000322] [EFO:0000323] [EFO:0000324] [EFO:0000325] [EFO:0000326] [EFO:0000327] [EFO:0000328] [EFO:0000329] [EFO:0000330] [EFO:0000331] [EFO:0000332] [EFO:0000333] [EFO:0000334] [EFO:0000335] [EFO:0000336] [EFO:0000337] [EFO:0000338] [EFO:0000339] [EFO:0000340] [EFO:0000341] [EFO:0000342] [EFO:0000343] [EFO:0000344] [EFO:0000345] [EFO:0000346] [EFO:0000347] [EFO:0000348] [EFO:0000349] [EFO:0000350] [EFO:0000351] [EFO:0000352] [EFO:0000353] [EFO:0000354] [EFO:0000355] [EFO:0000356] [EFO:0000357] [EFO:0000358] [EFO:0000359] [EFO:0000360] [EFO:0000361] [EFO:0000362] [EFO:0000363] [EFO:0000364] [EFO:0000365] [EFO:0000366] [EFO:0000367] [EFO:0000368] [EFO:0000369] [EFO:0000370] [EFO:0000371] [EFO:0000372] [EFO:0000373] [EFO:0000374] [EFO:0000402] [EFO:0000403] [EFO:0000437] [EFO:0000478] [EFO:0000502] [EFO:0000503] [EFO:0000519] [EFO:0000540] [EFO:0000571] [EFO:0000574] [EFO:0000609] [EFO:0000616] [EFO:0000621] [EFO:0000632] [EFO:0000637] [EFO:0000641] [EFO:0000681] [EFO:0000691] [EFO:0000693] [EFO:0000702] [EFO:0000708] [EFO:0000730] [EFO:0000756] [EFO:0000760] [EFO:0000761] [EFO:0000762] [EFO:0000848] [EFO:0000869] [EFO:0000887] [EFO:0000934] [EFO:0000973] [EFO:0000980] [EFO:0001071] [EFO:0001073] [EFO:0001074] [EFO:0001075] [EFO:0001076] [EFO:0001077] [EFO:0001078] [EFO:0001079] [EFO:0001080] [EFO:0001081] [EFO:0001360] [EFO:0001376] [EFO:0001378] [EFO:0001461] [EFO:0001639] [EFO:0001663] [EFO:0002001] [EFO:0002002] [EFO:0002324] [EFO:0002394] [EFO:0002422] [EFO:0002424] [EFO:0002429] [EFO:0002517] [EFO:0002532] [EFO:0002539] [EFO:0002618] [EFO:0002787] [EFO:0002793] [EFO:0002824] [EFO:0002884] [EFO:0002885] [EFO:0002886] [EFO:0002887] [EFO:0002888] [EFO:0002889] [EFO:0002890] [EFO:0002891] [EFO:0002892] [EFO:0002916] [EFO:0002918] [EFO:0002933] [EFO:0002937] [EFO:0002939] [EFO:0002966] [EFO:0003025] [EFO:0003032] [EFO:0003060] [EFO:0003094] [EFO:0003137] [EFO:0003811] [EFO:0003825] [EFO:0003897] [EFO:0003942] [EFO:0004422] [EFO:0004708] [EFO:0004905] [EFO:0005023] [EFO:0005235] [EFO:0005406] [EFO:0005537] [EFO:0005543] [EFO:0005699] [EFO:0005701] [EFO:0005704] [EFO:0005705] [EFO:0005706] [EFO:0005707] [EFO:0005708] [EFO:0005709] [EFO:0005710] [EFO:0005711] [EFO:0005712] [EFO:0005740] [EFO:0005803] [EFO:0005842] [EFO:0005844] [EFO:0005922] [EFO:0006460] [EFO:0006461] [EFO:0006492] [EFO:0006545] [EFO:0006852] [EFO:0007143] [EFO:0007336] [EFO:0007362] [EFO:0007365] [EFO:0007483] [EFO:0008498] [EFO:0008524] [EFO:0009052] [EFO:0009119] [EFO:0009120] [EFO:0009121] [EFO:0009375] [EFO:0009443] [EFO:0009602] [EFO:0009654] [EFO:0009744] [EFO:0009907] [EFO:0010105] [EFO:1000028] [EFO:1000042] [EFO:1000043] [EFO:1000069] [EFO:1000075] [EFO:1000101] [EFO:1000102] [EFO:1000128] [EFO:1000138] [EFO:1000139] [EFO:1000144] [EFO:1000149] [EFO:1000231] [EFO:1000238] [EFO:1000288] [EFO:1000292] [EFO:1000307] [EFO:1000311] [EFO:1000318] [EFO:1000348] [EFO:1000349] [EFO:1000360] [EFO:1000388] [EFO:1000414] [EFO:1000416] [EFO:1000429] [EFO:1000453] [EFO:1000490] [EFO:1000575] [EFO:1000646] [EFO:1000796] [EFO:1000950] [EFO:1001038] [EFO:1001100] [EFO:1001230] [EFO:1001480] [EFO:1001514] [EFO:1001515] [EFO:1001830] [EFO:1001946] [EFO:1001950] [EFO:1001951] [EFO:1001956] [EFO:1001958] [EFO:1001963] [EFO:1002008] [HP:0000028] [HP:0000077] [HP:0000078] [HP:0000122] [HP:0000138] [HP:0000153] [HP:0000160] [HP:0000175] [HP:0000194] [HP:0000201] [HP:0000219] [HP:0000232] [HP:0000248] [HP:0000268] [HP:0000272] [HP:0000277] [HP:0000280] [HP:0000286] [HP:0000307] [HP:0000311] [HP:0000316] [HP:0000322] [HP:0000331] [HP:0000343] [HP:0000347] [HP:0000356] [HP:0000358] [HP:0000403] [HP:0000405] [HP:0000422] [HP:0000431] [HP:0000457] [HP:0000463] [HP:0000474] [HP:0000483] [HP:0000486] [HP:0000490] [HP:0000494] [HP:0000506] [HP:0000519] [HP:0000527] [HP:0000535] [HP:0000572] [HP:0000582] [HP:0000588] [HP:0000629] [HP:0000664] [HP:0000687] [HP:0000708] [HP:0000713] [HP:0000718] [HP:0000722] [HP:0000729] [HP:0000735] [HP:0000736] [HP:0000739] [HP:0000750] [HP:0000752] [HP:0000767] [HP:0000787] [HP:0000817] [HP:0000871] [HP:0000921] [HP:0000939] [HP:0000953] [HP:0000954] [HP:0000957] [HP:0000978] [HP:0001028] [HP:0001053] [HP:0001182] [HP:0001249] [HP:0001250] [HP:0001252] [HP:0001256] [HP:0001258] [HP:0001263] [HP:0001269] [HP:0001270] [HP:0001276] [HP:0001328] [HP:0001380] [HP:0001382] [HP:0001508] [HP:0001510] [HP:0001513] [HP:0001622] [HP:0001629] [HP:0001631] [HP:0001642] [HP:0001643] [HP:0001680] [HP:0001782] [HP:0001800] [HP:0001824] [HP:0001845] [HP:0001848] [HP:0001863] [HP:0001864] [HP:0001999] [HP:0002013] [HP:0002019] [HP:0002020] [HP:0002061] [HP:0002062] [HP:0002092] [HP:0002123] [HP:0002194] [HP:0002208] [HP:0002211] [HP:0002232] [HP:0002236] [HP:0002307] [HP:0002317] [HP:0002353] [HP:0002465] [HP:0002474] [HP:0002574] [HP:0002705] [HP:0002714] [HP:0002757] [HP:0002779] [HP:0002926] [HP:0003121] [HP:0003125] [HP:0003186] [HP:0003196] [HP:0003808] [HP:0004322] [HP:0004325] [HP:0004349] [HP:0004370] [HP:0004474] [HP:0004482] [HP:0005180] [HP:0005487] [HP:0005831] [HP:0006934] [HP:0006986] [HP:0007328] [HP:0007526] [HP:0007544] [HP:0007663] [HP:0007970] [HP:0008115] [HP:0008404] [HP:0008551] [HP:0008734] [HP:0008935] [HP:0009927] [HP:0009928] [HP:0009933] [HP:0010562] [HP:0010743] [HP:0010751] [HP:0010862] [HP:0010863] [HP:0011090] [HP:0011123] [HP:0011220] [HP:0011311] [HP:0011344] [HP:0011471] [HP:0011645] [HP:0011800] [HP:0011924] [HP:0011968] [HP:0012382] [HP:0012443] [HP:0012448] [HP:0012450] [HP:0012471] [HP:0012646] [HP:0012741] [HP:0012745] [HP:0030055] [HP:0030190] [HP:0030276] [HP:0030517] [HP:0040019] [HP:0040199] [HP:0100022] [HP:0100033] [HP:0100559] [HP:0100814] [HP:0100880] [MONDO:0000430] [MONDO:0000870] [MONDO:0000872] [MONDO:0001056] [MONDO:0002397] [MONDO:0002598] [MONDO:0002601] [MONDO:0002627] [MONDO:0002630] [MONDO:0002631] [MONDO:0002678] [MONDO:0002728] [MONDO:0002924] [MONDO:0003002] [MONDO:0003142] [MONDO:0003537] [MONDO:0003572] [MONDO:0003751] [MONDO:0004950] [MONDO:0004952] [MONDO:0005005] [MONDO:0005062] [MONDO:0005072] [MONDO:0005184] [MONDO:0005575] [MONDO:0006058] [MONDO:0007254] [MONDO:0007255] [MONDO:0007256] [MONDO:0007257] [MONDO:0007258] [MONDO:0007259] [MONDO:0007260] [MONDO:0007261] [MONDO:0007262] [MONDO:0007263] [MONDO:0007264] [MONDO:0007265] [MONDO:0007266] [MONDO:0007267] [MONDO:0007268] [MONDO:0007269] [MONDO:0007270] [MONDO:0007271] [MONDO:0007272] [MONDO:0007273] [MONDO:0007274] [MONDO:0007275] [MONDO:0007276] [MONDO:0007277] [MONDO:0007278] [MONDO:0007279] [MONDO:0007280] [MONDO:0007281] [MONDO:0007282] [MONDO:0007283] [MONDO:0007284] [MONDO:0007285] [MONDO:0007286] [MONDO:0007287] [MONDO:0007288] [MONDO:0007289] [MONDO:0007290] [MONDO:0007291] [MONDO:0007292] [MONDO:0007293] [MONDO:0007294] [MONDO:0007295] [MONDO:0007296] [MONDO:0007297] [MONDO:0007298] [MONDO:0007299] [MONDO:0007300] [MONDO:0007301] [MONDO:0007302] [MONDO:0007303] [MONDO:0007304] [MONDO:0007305] [MONDO:0007306] [MONDO:0007307] [MONDO:0007308] [MONDO:0007309] [MONDO:0007310] [MONDO:0007311] [MONDO:0007312] [MONDO:0007313] [MONDO:0007314] [MONDO:0007315] [MONDO:0007316] [MONDO:0007317] [MONDO:0007318] [MONDO:0007319] [MONDO:0007320] [MONDO:0007321] [MONDO:0007322] [MONDO:0007323] [MONDO:0007324] [MONDO:0007325] [MONDO:0007326] [MONDO:0007327] [MONDO:0007328] [MONDO:0007329] [MONDO:0007330] [MONDO:0007331] [MONDO:0007332] [MONDO:0007333] [MONDO:0007334] [MONDO:0007335] [MONDO:0007336] [MONDO:0007337] [MONDO:0007338] [MONDO:0007339] [MONDO:0007340] [MONDO:0007341] [MONDO:0007342] [MONDO:0007343] [MONDO:0007344] [MONDO:0007345] [MONDO:0007346] [MONDO:0007347] [MONDO:0007348] [MONDO:0007349] [MONDO:0007350] [MONDO:0007351] [MONDO:0007352] [MONDO:0007353] [MONDO:0007354] [MONDO:0007355] [MONDO:0007356] [MONDO:0007357] [MONDO:0007358] [MONDO:0007359] [MONDO:0007360] [MONDO:0007361] [MONDO:0007362] [MONDO:0007363] [MONDO:0007364] [MONDO:0007365] [MONDO:0007366] [MONDO:0007367] [MONDO:0007368] [MONDO:0007369] [MONDO:0007370] [MONDO:0007371] [MONDO:0007372] [MONDO:0008170] [MONDO:0008903] [MONDO:0013296] [MONDO:0015760] [MONDO:0016690] [MONDO:0016691] [MONDO:0016692] [MONDO:0016698] [MONDO:0016700] [MONDO:0016735] [MONDO:0017043] [MONDO:0017349] [MONDO:0017387] [MONDO:0017590] [MONDO:0018177] [MONDO:0018874] [MONDO:0018905] [MONDO:0018908] [MONDO:0019087] [MONDO:0019457] [MONDO:0019470] [MONDO:0019474] [MONDO:0020511] [MONDO:0020560] [MONDO:0020580] [MONDO:0020663] [MONDO:0021335] [MONDO:0044335] [MONDO:0100096] [MONDO:0100342] [NCIT:C0549184] [NCIT:C115935] [NCIT:C200033] [NCIT:C25588] [NCIT:C27204] [NCIT:C2952] [NCIT:C3099] [NCIT:C3283] [NCIT:C4737] [NCIT:C4912] [NCIT:C7899] [Orphanet:110] [Orphanet:124] [Orphanet:183518] [Orphanet:217569] [Orphanet:2322] [Orphanet:552] [Orphanet:63] [Orphanet:654] [Orphanet:68367] [Orphanet:791] [Orphanet:811] [Orphanet:886] [Orphanet:98664] [PATO:0000461] [PATO:0000463] [PATO:0000464] [PATO:0000465] [PATO:0000466] [PATO:0000468] [PATO:0000469] [PATO:0000470] [PATO:0000471] [PATO:0000472] [UBERON:0000178] [UBERON:0000310] [UBERON:0000397] [UBERON:0000966] [UBERON:0000992] [UBERON:0001134] [UBERON:0001156] [UBERON:0001159] [UBERON:0001968] [UBERON:0002046] [UBERON:0002107] [UBERON:0002328] [UBERON:0002371] [UBERON:0002372] [UBERON:0003483] [UBERON:0003706] [UBERON:0003707] [UBERON:0003708] [UBERON:0003709] [UBERON:0003710] [UBERON:0003711] [UBERON:0003712] [UBERON:0003713] [UBERON:0003714] [UBERON:0003715] [UBERON:0003716] [UBERON:0003717] [UBERON:0003718] [UBERON:0003719] [UBERON:0003720] [UBERON:0003721] [UBERON:0003722] [UBERON:0003723] [UBERON:0003724] [UBERON:0003725] [UBERON:0003726] [UBERON:0003727] [UBERON:0003728] [UBERON:0003729] [UBERON:0003730] [UBERON:0003731] [UBERON:0003732] [UBERON:0003889] [UBERON:0005351] [UBERON:0010393] [UBERON:0012168] [UBERON:0013756]

Duo

0000001 0000004 0000005 0000006 0000007 0000010 0000011 0000012 0000014 0000015 0000016 0000017 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000043 0000044 0000045 0000046

Clear

10x Genomics Single Cell Gene Expression for SA609X6XB01899

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA609 passage 6
Dataset EGAD00001009120
10x Genomics Single Cell Gene Expression for SA605X3XB01966

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA605 passage 3
Dataset EGAD00001009142
10x Genomics Single Cell Gene Expression for SA535X6XB03101

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA535 passage 6
Dataset EGAD00001009149
10x Genomics Single Cell Gene Expression for SA1035X7XB03502

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA1035 passage 7
Dataset EGAD00001009151
10x Genomics Single Cell Gene Expression for SA1035X6XB03216

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA1035 passage 6
Dataset EGAD00001009154
10x Genomics Single Cell Gene Expression for SA535X4XB02498

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA535 passage 4
Dataset EGAD00001009152
10x Genomics Single Cell Gene Expression for SA535X5XB02891

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA535 passage 5
Dataset EGAD00001009155
10x Genomics Single Cell Gene Expression for SA604X9XB02425

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA604 passage 9
Dataset EGAD00001009159
10x Genomics Single Cell Gene Expression for SA535X5XB02895

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA535 passage 5
Dataset EGAD00001009156
10x Genomics Single Cell Gene Expression for SA610X3XB03802

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA610 passage 3
Dataset EGAD00001009160

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