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• Single cell karyotype sequencing of 7 samples from colorectal cancer (CRC) patients

  Contains data for all cells sequenced for this study. Data is organized as one bam-file per sample. Individual cells can be identified through the CB tag in the bam-files.

  Dataset EGAD00001006438

• A98256A

  Whole genome sequencing for single cells for library A98256A 1372 cells; filetype=bam

  Dataset EGAD00001007124

• A98258B

  Whole genome sequencing for single cells for library A98258B 1357 cells; filetype=bam

  Dataset EGAD00001007127

• A95646B

  Whole genome sequencing for single cells for library A95646B 507 cells; filetype=bam

  Dataset EGAD00001007306

• A98168A

  Whole genome sequencing for single cells for library A98168A 1294 cells; filetype=bam

  Dataset EGAD00001007624

• Glioblastoma stem cell lines WGS data

  WGS data for 20 Glioblastoma stem cell (GSC) lines and matched blood samples. Fastq files are available. For 10 GSC samples and the 10 matched blood samples the reads are on 3 fastq files per sample

  Dataset EGAD00001006488

• A96130B

  Whole genome sequencing for single cells for library A96130B 1267 cells; filetype=bam

  Dataset EGAD00001007114

• Transcriptomic profiles of neuroblastoma PDXs and primary tumors

  This dataset contains bam files for RNA-seq experiments for 6 neuroblastoma PDXs (Patient Derived Xenograft) and 3 pairs of neuroblastoma tumors at diagnosis and at relapse.

  Dataset EGAD00001003393

• A96115B

  Whole genome sequencing for single cells for library A96115B 1201 cells; filetype=bam

  Dataset EGAD00001007112

• A98253A

  Whole genome sequencing for single cells for library A98253A 1250 cells; filetype=bam

  Dataset EGAD00001007629

• A98289A

  Whole genome sequencing for single cells for library A98289A 1066 cells; filetype=bam

  Dataset EGAD00001007634

• Exome and Targeted sequencing of GZL

  Tumor and matching normal exomes for 28 GZL cases (n=56) and targeted capture sequencing for 42 GZL cases with 3 matching normals and 2 pooled normals (n=47)

  Dataset EGAD00001006328

• PPIL4 is essential for brain angiogenesis and implicated in intracranial aneurysms in humans

  Patients in IA cohort with PPIL4 mutations (Please see Supplementary Table 3 for clinical characteristics of the patients)

  Dataset EGAD00001008106

• BLUEPRINT September 2016, ATAC-seq for bone marrow, on Genome GRCh38

  ATAC-seq data for 4 sample(s) from bone marrow, on Genome GRCh38. 4 run(s), 4 experiment(s), 4 alignment(s). Part of BLUEPRINT (September 2016).

  Dataset EGAD00001002710

• Reference exome data for a Northern Brazilian population

  Here we provide a catalogue of variants called after sequencing the exomes of 45 babies from the State of Rio Grande do Nord in Brazil. Our data set provides a useful reference point for diagnosis of rare diseases in Brazil.

  Dataset EGAD00001006407

• Data for the genome‐wide association study of cutaneous leishmaniasis in Brazil

  DNAs were genotyped on Illumina Infinium HumanCoreExome Beadchips (Illumina Inc., San Diego, CA, USA) with probes for 551,004 single nucleotide variants (SNVs): 282,373 informative across ancestries; 268,631 exome-focused. Human genome build 37 (hg19) was used.

  Dataset EGAD00001006681

• Whole exome sequencing data for patients with Bosma arhinia microphthalmia syndrome (BAMS)

  Whole exome sequencing data for patients with Bosma arhinia microphthalmia syndrome (BAMS). The dataset includes 21 samples from 7 families with BAMS; see Gordon et al, Nature Genetics, 2017.

  Dataset EGAD00001003130

• A96118A

  Whole genome sequencing for single cells for library A96118A 1193 cells; filetype=bam

  Dataset EGAD00001007113

• Whole exome sequencing of human and mouse sarcoma samples for personalized therapy

  Whole exome sequencing of human and mouse sarcoma samples for creation of personalized therapy options. Tissues were sequenced directly; no interventions or alterations were made to the tissue samples

  Dataset EGAD00001004885

• Whole Genome Sequencing (WGS) for St. Jude High Grade Glioma (HGG) study

  Whole Genome Sequencing (WGS) for St. Jude High Grade Glioma (HGG) study

  Dataset EGAD00001000806

• Exome and Transcriptome for pan-cancer gene-drug analysis

  Total of 584 tumor specimens and/or patient-derived cells across 14 cancer types were subjected for whole-exome/targeted-exome and/or whole-transcriptome sequencing.

  Dataset EGAD00001003441

• V4 panel bait design test (2018-03-07)

  Targeted gene screen of FFPEs, cell lines and primary CRC tumours for testing the new V4 Colorectal gene panel. . This dataset contains all the data available for this study on 2018-03-07.

  Dataset EGAD00001004001

• GENCORD2_GENOTYPES

  204 individuals were genotyped with the Illumina 2.5M Omni chip. Filtered genotypes were imputed into the 1000 genomes project European panel SNPs. Beagle R2 is indicated in VCF files for further filtering. See Materials and Methods in publication for details.

  Dataset EGAD00001000428

• single-cell RNAseq FASTq files for three muscle-invasive bladder tumors

  single-cell RNAseq FASTq files for three muscle-invasive bladder tumors

  Dataset EGAD00001008001

• A118845B

  Whole genome sequencing for single cells for library A118845B 1209 cells; filetype=bam

  Dataset EGAD00001007098

• A98295B

  Whole genome sequencing for single cells for library A98295B 1381 cells; filetype=bam

  Dataset EGAD00001007132

• A98234A

  Whole genome sequencing for single cells for library A98234A 1240 cells; filetype=bam

  Dataset EGAD00001007626

• Exome sequencing of patients with acute promyelocytic leukemia

  The dataset consists in 64 fastq files from 23 patients with acute promyelocytic leukemia. Exome sequencing was conducted on several stages (Diagnosis, Remission, Relapse) for each patient. For 5 patients, only Diagnosis and Relapse samples are available.

  Dataset EGAD00001004043

• Whole Exome Sequencing (WES) for St. Jude High Grade Glioma (HGG) study

  Whole Exome Sequencing (WES) for St. Jude High Grade Glioma (HGG) study

  Dataset EGAD00001000807

• Cram files for study entitled Compound heterozygous variants in LAMC3 in association with posterior periventricular nodular heterotopia

  This dataset contains three cram files for paired end sequencing of a trio, sequenced with Illumina Hiseq 2500

  Dataset EGAD00001006578

• Exome_sequencing_of_Non_syndromic_Congenital_Heart_Defects

  Exome sequencing of ~1,800 patients with non-syndromic Congenical Heart Defects (CHD) to identify genes enriched for damaging rare variants that increase risk of CHD

  Study EGAS00001002522

• A110621A

  Whole genome sequencing for single cells for library A110621A 1137 cells; filetype=bam

  Dataset EGAD00001007601

• Single Cell Genome Sequence for DLP+ library A98243B

  Single Cell Genome Sequence for high grade serous ovarian carcinoma patient SA1096A, patient-derived xenograft SA1052D passage 1 on DLP+ library A98243B

  Dataset EGAD00001009481

• A110673B

  Whole genome sequencing for single cells for library A110673B 1153 cells; filetype=bam

  Dataset EGAD00001007603

• A118830A

  Whole genome sequencing for single cells for library A118830A 912 cells; filetype=bam

  Dataset EGAD00001007604

• A95697B

  Whole genome sequencing for single cells for library A95697B 1233 cells; filetype=bam

  Dataset EGAD00001007610

• Single Cell Genome Sequence for DLP+ library A118808A

  Single Cell Genome Sequence for high grade serous ovarian carcinoma patient-derived xenograft SA1096B passage 1 on DLP+ library A118808A

  Dataset EGAD00001009440

• 10x Genomics Single Cell Gene Expression for SA1054

  10x Genomics Single Cell Gene Expression for Telomerase immortalized breast epithelium cell line 184-hTERT-22 L9 83.86

  Dataset EGAD00001009113

• Single Cell Genome Sequence for DLP+ library A96180A

  Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA604 passage 6 on DLP+ library A96180A

  Dataset EGAD00001009463

• 10x Genomics Single Cell Gene Expression for SA1096BX1XB02037

  10x Genomics Single Cell Gene Expression for High grade serous ovarian carcinoma patient-derived xenograft SA1096 passage 1

  Dataset EGAD00001009137

• 10x Genomics Single Cell Gene Expression for OV2295(R2)

  10x Genomics Single Cell Gene Expression for High grade serous ovarian carcinoma cell line OV2295(R2)

  Dataset EGAD00001009144

• 10x Genomics Single Cell Gene Expression for SA1035X6XB03211

  10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA1035 passage 6

  Dataset EGAD00001009150

• 10x Genomics Single Cell Gene Expression for TOV2295(R)

  10x Genomics Single Cell Gene Expression for High grade serous ovarian carcinoma cell line TOV2295(R)

  Dataset EGAD00001009158

• A96183C

  Whole genome sequencing for single cells for library A96183C 1036 samples; filetype=bam

  Dataset EGAD00001008247

• Illumina genome sequencing data for HICF2 craniosynostosis families (Genome Medicine)

  BAM files for two families recruited to the HICF2 genome sequencing project due to craniosynostosis. One family is a singleton and the other is an affected mother-daughter duo.

  Dataset EGAD00001011373

• Single Cell Genome Sequence for DLP+ library A96161A

  Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA604 passage 8 on DLP+ library A96161A

  Dataset EGAD00001009457

• Single Cell Genome Sequence for DLP+ library A96113A

  Single Cell Genome Sequence for high grade serous ovarian carcinoma patient-derived xenograft SA1049A passage on DLP+ library A96113A

  Dataset EGAD00001009453

• Single Cell Genome Sequence for DLP+ library A96130A

  Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA609 passage 8 on DLP+ library A96130A

  Dataset EGAD00001009454

• Single Cell Genome Sequence for DLP+ library A96154A

  Single Cell Genome Sequence for triple negative breast cancer patient SA1135, patient SA1162SA on DLP+ library A96154A

  Dataset EGAD00001009456

• Single Cell Genome Sequence for DLP+ library A96175A

  Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA604 passage 7 on DLP+ library A96175A

  Dataset EGAD00001009461