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• SweGen whole-genome sequencing from the Swedish Twin Registry

  The dataset contains whole-genome sequencing data (aligned read files) in CRAM-format (lossless compression) for a total of 942 DNA samples, selected to represent a cross-section of the Swedish population. The samples originate from the Swedish Twin Registry (STR) and have been obtained from different geographical regions. For each of the 942 individuals, DNA was extracted from a blood sample and subject to whole genome sequencing (WGS). The WGS was performed using 2x150 bp paired-end chemistry on Illumina HiSeq X Ten instrumentation at the SciLifeLab National Genomics Infrastructure (NGI) in Stockholm and Uppsala. FASTQ files generated by WGS were analyzed using the nf-core pipeline Sarek, which includes pre-processing, alignment to the human GRCh38 reference genome, and germline variant calling. All participants gave their written informed consent and the TwinGene study was approved by the regional ethics committee (Regionala Etikprövningsnämnden, Stockholm, dnr 2007-644-31, dnr 2014/521-32). Access to phenotypic information can be requested from the Swedish Twin Registry (http://ki.se/en/research/the-swedish-twin-registry).

  Dataset EGAD50000001326

• Targeted capture ctDNA Library CRCQV42Run044-15

  Targeted capture ctDNA Library CRCQV42Run044-15 from patient PBC0001818, plasma 3 month sample

  Dataset EGAD00001010665

• Targeted capture ctDNA Library CRCQV42Run017-15

  Targeted capture ctDNA Library CRCQV42Run017-15 from patient PBC0001673, plasma 24 month sample

  Dataset EGAD00001010407

• Targeted capture ctDNA Library CRCQV42Run039-15

  Targeted capture ctDNA Library CRCQV42Run039-15 from patient PBC0001432, plasma 6 month sample

  Dataset EGAD00001010610

• Targeted capture ctDNA Library CRCQV42Run043-15

  Targeted capture ctDNA Library CRCQV42Run043-15 from patient PBC0001470, plasma 3 month sample

  Dataset EGAD00001010644

• Targeted capture ctDNA Library CRCQV42Run045-15

  Targeted capture ctDNA Library CRCQV42Run045-15 from patient PBC0001714, plasma 3 month sample

  Dataset EGAD00001010686

• Targeted capture ctDNA Library CRCQV42Run033-15

  Targeted capture ctDNA Library CRCQV42Run033-15 from patient PBC0002533, buffy coat sample

  Dataset EGAD00001010554

• WGS datasets of pediatric glioblastoma

  WGS with linked reads of pediatric glioblastoma. For each patient, blood and tumor tissue were sequenced. For two patients, we also provide sequencing data for the blood of their parents.

  Dataset EGAD00001005212

• DIPG WES and RNA-Seq

  We characterised H3K27M-mutant diffuse intrinsic pontine glioma (DIPG, n=21) and RNA-Seq (n=26 DIPG, 12 normal brain)

  Dataset EGAD00001006450

• Institute of Pathology at the University Hospital of Lausanne CHUV

  Prof Laurence de Leval

  Dac EGAC50000000314