Search Results - EGA European Genome-Phenome Archive

Sequencing data for study Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses for library TENX018_VOA11019SA_002

Single-cell RNA-sequencing data generated using the 10X genomics chromium platform, comprising patient derived xenograft, cell line, and primary tumour data. This includes different digestion conditions (37C collagenase vs 6C cold protease) and FACS sorting for live, dying, and dead cells. 24 samples; filetype=fastq

Dataset EGAD00001005157

Megabase scale methylation phasing using Nanopore long reads and NanoMethPhase

This paper describes the work by Akbari V,. et al. on detection of allele specific methylation using oxford nanopore sequencing data. They have developed set of tools, SNVoter and NanoMethPhase, and workflow which enable the detection of allele specific methylation even in samples with sparse coverage of nanopore sequencing data.

Dataset EGAD00001007920

Genome and transcriptome sequence data from a poorly differentiated chordoma of C1-C2 spine patient

Genome and transcriptome sequence data from a poorly differentiated chordoma of C1-C2 spine patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

Dataset EGAD00001008012

Sequencing data for study Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses for library TENX024_SA604X9XB02417_002

Single-cell RNA-sequencing data generated using the 10X genomics chromium platform, comprising patient derived xenograft, cell line, and primary tumour data. This includes different digestion conditions (37C collagenase vs 6C cold protease) and FACS sorting for live, dying, and dead cells. 12 samples; filetype=fastq

Dataset EGAD00001005148

WGS data from NEN patient derived tumor organoids (PDTOs) and matched parental tumors - MUMC

The dataset includes cram files from WGS of 2 NEN tumors and matched PDTOs. For all tumors, cram files from WGS of matched normal tissue from the corresponding patients are included. Analysis VCF files are also included in the dataset. The sequencing was done with a NovaSeq 6000 instrument.

Dataset EGAD00001009988

Genome and transcriptome sequence data from a neuroendocrine tumor likely pancreatic origin patient

Genome and transcriptome sequence data from a neuroendocrine tumor likely pancreatic origin patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

Dataset EGAD00001002591

Genome and transcriptome sequence data from a small cell/neuroendocrine carcinoma of the lung patient

Genome and transcriptome sequence data from a small cell/neuroendocrine carcinoma of the lung patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

Dataset EGAD00001002617

Genome and transcriptome sequence data from a squamous cell carcinoma of unknown primary cancer patient

Genome and transcriptome sequence data from a squamous cell carcinoma of unknown primary cancer patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

Dataset EGAD00001002624

iPSC and iNeuron RNAseq, chip-seq and single cell CRISPR activation

Dataset includes 1) RNAseq for Bob_Ngn2 cell differentiation from iPSC to iNeuron stage (time point 0, 24, 48 and 96 hours). 2) Bob_Ngn2 cell line chip-seq (H3K4me3, H3K4me1, H3K27me3, H3K9me3, H3K27ac, H3K36me3) for both iPSC and iNeuron stage with 3 replicates at each time point. 3) Single cell CRISPR activation experiment with 96 endogenous genes.

Dataset EGAD00001010050

Sequencing data for study Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses for library TENX024_SA604X9XB02417_001

Single-cell RNA-sequencing data generated using the 10X genomics chromium platform, comprising patient derived xenograft, cell line, and primary tumour data. This includes different digestion conditions (37C collagenase vs 6C cold protease) and FACS sorting for live, dying, and dead cells. 12 samples; filetype=fastq

Dataset EGAD00001005147

Genome and transcriptome sequence data from a metastatic malignant peripheral nerve sheath tumor patient

Genome and transcriptome sequence data from a metastatic malignant peripheral nerve sheath tumor patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

Dataset EGAD00001003052

Genome and transcriptome sequence data from a metastatic non-small cell lung adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic non-small cell lung adenocarcinoma patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

Dataset EGAD00001004714

Genome and transcriptome sequence data from a metastatic carcinoma to paraspinal mass with primary unknown patient

Genome and transcriptome sequence data from a metastatic carcinoma to paraspinal mass with primary unknown patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

Dataset EGAD00001004693

Genome and transcriptome sequence data from a squamous cell carcinoma of ge junction patient

Genome and transcriptome sequence data from a squamous cell carcinoma of ge junction patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study

Dataset EGAD00001003646

Exome reads

This dataset contains WES data (.bam files) and associated phenotype information from 10 patients included in our microbiome study who went on to anti PD-1 immunotherapy for the treatment of metastatic melanoma at the University of Texas MD Anderson Cancer Center. Both tumor and matching germ line normal were sequenced on each patient using Illumina HiSeq 2500. The average coverage was 283X in tumors and 135X in germline (tumor+germline overall:209, Range: 0-1552).

Dataset EGAD00001003797

10931 results for "division 1 coins fc 26 Buyfc26coins.com is FC 26 coins official site..AwVj"

in 19.28 milliseconds.

Sequencing data for study Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses for library TENX018_VOA11019SA_002

Megabase scale methylation phasing using Nanopore long reads and NanoMethPhase

Genome and transcriptome sequence data from a poorly differentiated chordoma of C1-C2 spine patient

Sequencing data for study Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses for library TENX024_SA604X9XB02417_002

WGS data from NEN patient derived tumor organoids (PDTOs) and matched parental tumors - MUMC

Genome and transcriptome sequence data from a neuroendocrine tumor likely pancreatic origin patient

Genome and transcriptome sequence data from a small cell/neuroendocrine carcinoma of the lung patient

Genome and transcriptome sequence data from a squamous cell carcinoma of unknown primary cancer patient

iPSC and iNeuron RNAseq, chip-seq and single cell CRISPR activation

Sequencing data for study Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses for library TENX024_SA604X9XB02417_001

Genome and transcriptome sequence data from a metastatic malignant peripheral nerve sheath tumor patient

Genome and transcriptome sequence data from a metastatic non-small cell lung adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic carcinoma to paraspinal mass with primary unknown patient

Genome and transcriptome sequence data from a squamous cell carcinoma of ge junction patient

Exome reads

Genome and transcriptome sequence data from a melanoma of the right buccal mucosa patient

Genome and transcriptome sequence data from a metastatic non-small cell lung carcinoma patient

Genome and transcriptome sequence data from a metastatic non-small cell lung cancer patient

Genome and transcriptome sequence data from a metastatic adenocarcinoma of the rectum patient

Genome and transcriptome sequence data from a metastatic high-grade adenocarcinoma of the fallopian tubes patient

Genome and transcriptome sequence data from a high grade sarcoma of the epithelioid/spindle cell patient

Genome and transcriptome sequence data from a clear cell carcinoma of the left ovary patient

Genome and transcriptome sequence data from a squamous cell carcinoma of the anus patient

Genome and transcriptome sequence data from a sigmoid cancer and an ampullary cancer patient

Genome and transcriptome sequence data from a mullerian mixed tumor with carcinosarcoma of the ovaries patient