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• Whole genome sequencing of 78 follicular lymphoma tumours and matched normals

  Whole genome sequencing for tumour/normal matched pairs from 78 samples

  Dataset EGAD00001011343

• Engineered cartilage: deriving design principles from human developmental pathways (2025-10-02)

  Engineered cartilage: deriving design principles from human developmental pathways . This dataset contains all the data available for this study on 2025-10-02.

  Dataset EGAD00001015724

• ATAC-seq

  This dataset contains the raw sequencing data (Runs) for all 10x Genomics single-cell ATAC-seq Experiment.

  Dataset EGAD00001009822

• 10x Single Cell Gene Expression Library TENX068

  10x Single Cell Gene Expression library TENX068 for Triple negative breast cancer patient-derived xenograft SA609X4XB03080

  Dataset EGAD00001011210

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0146_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0146_002 for Triple negative breast cancer patient-derived xenograft SA609X5XB03223

  Dataset EGAD00001011214

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0182_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0182_001 for Triple negative breast cancer patient-derived xenograft SA535X7XB03304

  Dataset EGAD00001011225

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0189_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0189_002 for Triple negative breast cancer patient-derived xenograft SA535X8XB03663

  Dataset EGAD00001011229

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0145_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0145_001 for Triple negative breast cancer patient-derived xenograft SA1035X7XB03338

  Dataset EGAD00001011244

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0175_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0175_002 for Triple negative breast cancer patient-derived xenograft SA1035X8XB03631

  Dataset EGAD00001011249

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0170_003

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0170_003 for Follicular lymphoma patient sample TFRI_Cont_5

  Dataset EGAD00001010207

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0183_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0183_001A for Follicular lymphoma patient sample TFRIPAIR9_FL

  Dataset EGAD00001010221

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0197_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0197_001A for Follicular lymphoma patient sample TFRIPAIR12_FL

  Dataset EGAD00001010224

• APCDR AGV Project: Low depth (4x) sequence data from an Ugandan population (BAMs)

  Low depth (4x) Illumina HiSeq raw sequence data for 100 unrelated Baganda from rural Uganda.

  Dataset EGAD00001001008

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0197_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0197_003A for Follicular lymphoma patient sample TFRI_Cont_12

  Dataset EGAD00001010213

• Dataset for LCPlus_WGS

  WES/WGS sequencing data of 56 chromothriptic tumor and control runs, which were uploaded to umbrella studies. The sequencing was always paired

  Dataset EGAD00001009275

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0020_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0020_002 for Triple negative breast cancer patient-derived xenograft SA604X8XB02164

  Dataset EGAD00001011254

• Raw sequencing data for PicoCNV and MutLX2 development papers

  Bulk tumour, germline and DigiPico WGS BAM files from patients 11611, 11615, 11619

  Dataset EGAD00001010302

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0169_003

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0169_003 for Follicular lymphoma patient sample TFRI_Cont_4

  Dataset EGAD00001010206

• Whole exome sequencing of serially sampled TNBC patients on pre/on PARP inhibitor

  Novaseq whole exome raw sequence files (FastQ) for breast cancer tumor core biopsies and blood normal control.

  Dataset EGAD00001007916

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0171_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0171_003A for Follicular lymphoma patient sample TFRI_Cont_6

  Dataset EGAD00001010208

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0178_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0178_003A for Follicular lymphoma patient sample TFRI_Cont_8

  Dataset EGAD00001010209

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0188_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0188_003A for Follicular lymphoma patient sample TFRI_Cont_11

  Dataset EGAD00001010212

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0187_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0187_003A for Follicular lymphoma patient sample TFRI_Cont_10

  Dataset EGAD00001010211

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0198_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0198_003A for Follicular lymphoma patient sample TFRI_Cont_13

  Dataset EGAD00001010214

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0167_001

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0167_001 for Follicular lymphoma patient sample TFRIPAIR2_FL

  Dataset EGAD00001010215

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0168_001

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0168_001 for Follicular lymphoma patient sample TFRIPAIR3_FL

  Dataset EGAD00001010216

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0171_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0171_001A for Follicular lymphoma patient sample TFRI_Pair_6_FL

  Dataset EGAD00001010219

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0198_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0198_001A for Follicular lymphoma patient sample TFRI_Pair_13_FL

  Dataset EGAD00001010225

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0188_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0188_001A for Follicular lymphoma patient sample TFRIPAIR11_FL

  Dataset EGAD00001010223

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0167_003

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0167_003 for Follicular lymphoma patient sample TFRI_Cont_2

  Dataset EGAD00001010204

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0170_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0170_001A for Follicular lymphoma patient sample TFRIPAIR5_FL

  Dataset EGAD00001010218

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0187_002A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0187_002A for Diffuse large B-cell lymphoma patient sample TFRIPAIR10_DLBCL

  Dataset EGAD00001010233

• High grade serous ovarian carcinoma sample

  Multi-region whole genome sequencing of an high grade serous ovarian carcinoma sample for characterization of genomic intra-tumoural heterogeneity.

  Dataset EGAD00001000978

• RNA-sequencing of cohesin-mutated and wildtype adult AMLs

  Transcriptomic data generated by RNA-sequencing for adult human AMLs with STAG2 or RAD21 mutations or no cohesin mutations (CTRL-AMLs).

  Dataset EGAD00001011197

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0063_000

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0063_000 for Triple negative breast cancer patient-derived xenograft SA609X3XB01584

  Dataset EGAD00001011209

• RNA sequencing for gastric cancer ascites

  Whole transcriptome sequencing (RNA-seq) was performed on 39 PC specimens. Among them, 21 specimens also had WES data.

  Dataset EGAD00001004365

• Angiopredict Whole genome Shallow Sequencing

  Shallow sequencing of metastatic colorectal cancer samples for the Angiopredict and Nobev cohorts described in: van Dijk et al., JCO, in revision

  Dataset EGAD00001003990

• Bisulphite MPN colonies (2019-09-05)

  Swift kit whole genome bisulphite of MPN colonies . This dataset contains all the data available for this study on 2019-09-05.

  Dataset EGAD00001005313

• Targeted panel sequencing for brainstem glioma

  Targeted panel sequencin on Illumina HiSeq X Ten of brainstem glioma primary tumor and blood samples

  Dataset EGAD00001006093

• Rio Dataset

  Homologous recombination DNA repair deficiency and PARP inhibition activity in primary triple negative breast cancer. RNA-Seq data for paired baseline and end of treatment samples

  Dataset EGAD00001006120

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0014_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0014_001 for Triple negative breast cancer patient-derived xenograft SA604X6XB01979

  Dataset EGAD00001011251

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0206_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0206_002 for Triple negative breast cancer patient-derived xenograft SA535X10XB03696

  Dataset EGAD00001011235

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0163_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0163_001 for Triple negative breast cancer patient-derived xenograft SA609X7XB03505

  Dataset EGAD00001011219

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0015_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0015_001 for Triple negative breast cancer patient-derived xenograft SA604X6XB01979

  Dataset EGAD00001011252

• Engineered cartilage: deriving design principles from human developmental: RNA (2025-07-30)

  Engineered cartilage: deriving design principles from human developmental pathways . This dataset contains all the data available for this study on 2025-07-30.

  Dataset EGAD00001015664

• MethylScan data of plasma samples

  10ng from each cfDNA sample was used as the input material. For gDNA samples, 1.5-2ug each was first sonicated by Covaris R230 system (Woburn, MA). Next, size-selection with 0.8x-1.5x two-step Ampure XP beads was performed to enrich the 150-200bp fragments. 200ng of the size-selected gDNA was used as input material. The pre-capture library construction was performed with NEB UltraII DNA library prep kit for Illumina (Ipswich, MA) and the adapter was the methylated EM-seq adapter. Before the first PCR amplification, the gDNA samples were subjected to bisulfite conversion by QIAGEN Epitect kit, and cfDNA samples were subjected to enzymatic conversion by NEBNext enzymatic methyl-seq kit if the hybrid capture panel designed for converted DNA was used downstream. Twist panel hybrid capture was performed with their standard protocol (Twist Bioscience, South San Francisco, CA). The concentration of the post-capture library after the second PCR amplification was measured by Qubit 1xdsDNA HS kit (ThermoFisher, Waltham, MA). Their quality was examined by TBE-UREA PAGE and Bioanalyzer before sequencing. Libraries were then sequenced with 150bp paired-end reads on Illumina machines by Genewiz, Inc. (South Plainfield, NJ, USA). This dataset contains MethylScan data of the plasma samples from 248 noncancer individuals and 27 cancer patients (17 liver and 10 GI-tract cancers).

  Dataset EGAD00001015815

• Single-cell transcriptomic analyses of peritoneal metastases from patients with colorectal cancer metastasized to the peritoneum

  The data published here contains single-cell RNA-sequencing (scRNAseq) data as obtained using the 3' scRNAseq using Chromium Single Cell 3’ Reagent from 10X Genomics on peritoneal metastases (PM) from patients with colorectal cancer (CRC) and PM. Sequencing was performed in a paired-ended fashion on the NovaSeq6000.

  Dataset EGAD50000000249

• Targeted capture sequencing to identify MYC, BCL2, and BCL6 rearrangements in non-Hodgkin lymphoma

  Targeted capture sequencing of 364 samples representing a mix of Burkitt lymphoma, diffuse large B-cell lymphoma, follicular lymphoma, and high-grade B-cell lymphomas with MYC and BCL2 or BCL6 rearrangements. Capture space covers 3.5 Mb of the human genome including regions around MYC, BCL2, BCL6, PAX5, and IGH/K/L.

  Dataset EGAD50000000489

• 10X Genomics single-nuclei RNA-sequencing of endometrium from women with and without PCOS

  Chromium Next GEM Single Cell 3’ Gel Bead Kit (Dual Index) v3.1 (10X Genomics) of endometrium from 27 women including 5 without PCOS and 12 with PCOS. Following baseline biopsies, PCOS participants underwent a 16-week randomized controlled trial with metformin (n=7) or lifestyle intervention (n=3). 25,000 raw reads per nucleus

  Dataset EGAD50000001017

• Long read sequencing to detect structural variants in Indian patient with non-syndromic autism spectrum disorders

  This study involved performing long read whole genome sequencing using Oxford Nanopore Technology platform on to detect causative structural variants in patients with non-syndromic autism spectrum disorder. This study was performed on 23 such children in whom prior karyotyping, Fragile-X analysis (in males), chromosomal microarray and whole exome sequencing did not identify a causative variant.

  Dataset EGAD50000001231