16488 results for "sec+and+unspecified+malignant+neoplasm"

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• Data access committee for "Detection of brain cancer using genome-wide cell-free DNA fragmentomes"

  The data access committee for “ Detection of brain cancer using genome-wide cell-free DNA fragmentomes”. The DAC is comprised of Drs. Dimitrios Mathios, Jillian Phallen, Victor Velculescu, Robert Scharpf, Noushin Niknafs, and Shashikant Koul, and can be contacted at skoul3@jh.edu.

  Dac EGAC50000000605

• Human exome sequencing data (n=2) from the publication "Germline variants in UHRF1 are associated with multi-locus imprinting disturbance in humans and mice"

  II2_hg38.bwa.QC.vcf III1_III2_hg38.bwa.QC.vcf The VCF files of the mother (II:2) and both affected siblings (III:1+III:2, merged).

  Dataset EGAD50000001684

• Stem-like peripheral helper T cells seed their effector counterpart in rheumatoid arthritis

  The dynamics of helper T cells in the synovium of rheumatoid arthritis was investigated using scRNA-seq, scTCR-seq, and spatial transcriptome.

  Study JGAS000774

• BipEx_Owen_Cardiff

  "BipEx_EGAS000010058455_Owen_Cardiff Bipolar Disorder Exomes. This research project was a collaboration between Cardiff University, UK and the Stanley Center at the Broad Institute. In this project we sequenced and analyzed the whole exomes of 1,106 Bipolar case/control samples from collaborators in UK. Genomic DNA from each sample was sequenced to a mean depth of 20x."

  Dac EGAC50000000139

• WES_dataset2

  Twenty-six EATLs and 22 additional cases of MEITLs (among which 5 had only tumoral tissue available) were sequenced using the xgen research panels v1.0 and v2.0 from IDT DNA (Newark, New Jersey, USA).

  Dataset EGAD50000001621

• Whole genome sequencing analysis of esophageal squamous cell carcinoma

  Whole genome sequencing analysis of esophageal squamous cell carcinoma and the association of their genomic features with the response of neo-aduvant chemotherapy

  Study JGAS000155

• Whole exome sequencing of 69 trios with bipolar disorder

  We performed whole exome sequencing to trios with bipolar disorder to elucidate genetic architecture of bipolar disorder including de novo mutations and transmitted variants.

  Study JGAS000273

• Searching for DNA methylation sites associated with panic disorder

  This study aimed to identify whole-genome DNA methylation profile of panic disoeder and to search DNA methylation sites associated with the disease

  Study JGAS000111

• RNA isoform diversity, splicing variants, and switching in single cells of the Alzheimer’s disease brain

  Paired 10X 3' single-nucleus RNA sequencing with PacBio Kinnex long-read sequencing in 7 control and 8 Alzheimer's disease human frontal cortex samples.

  Dataset EGAD50000002124

• BipEx_Adolfsson_Umea

  "BipEx_EGAS00001005842_Umea University Bipolar Disorder Exomes. This research project was a collaboration between Umea University, Sweden and the Stanley Center at the Broad Institute. In this project we sequenced and analyzed the whole exomes of 924 Bipolar case/control samples from collaborators in Sweden. Genomic DNA from each sample was sequenced to a mean depth of 20x."

  Dac EGAC50000000133

• WHOLE GENOME SEQUENCING OF CLEAR CELL RENAL CELL CARCINOMA IN VHL PATIENT

  This submission contains Whole Genome Sequencing data of six ccRCCs, four cysts and one blood DNA sample of a VHL patient.

  Study EGAS50000000295

• RNA-Sequencing of whole blood collected from RNU4ATAC/RNU6ATC patients and controls

  RNA-Sequencing of whole blood collected from patients with biallelic RNU4ATAC/RNU6ATAC variants, parents who carry the variants, healthy controls and type 1 diabetes controls.

  Dataset EGAD50000002242

• Sorted WGS for three samples

  This dataset contains Whole Genome Sequencing (WGS) data from two cell populations (myeloid and lymphoid) and the germline population sorted from a primary sample of the novel FOXF1/FENDRR ALL subtype. All the three samples are in bam file type.

  Dataset EGAD50000001792

• G-SAM: Transcriptional Evolution of Glioblastomas Treated With Standard of Care

  Collection of mostly matching primary and recurrent glioblastoma RNA-seq sample pairs, also matching with an earlier DNA sequencing study

  Study EGAS00001005436

• TraIT Cell Line use case

  Experimental data collected from a set of cell lines. To be used as a test for pipelines and infrastructure.

  Study EGAS00001001476

• RNA-sequencing of Non-muscle Invasive Bladder cancer (NMIBC)

  This RNA-sequencing cohort includes 78 Non-muscle Invasive Bladder cancer (NMIBC) samples and 7 Muscle Invasive Bladder cancer (MIBC) samples.

  Study EGAS00001004358

• Extramammary Paget Disease

  In order to clarify the mutational landscape of Extramammary Paget disease, we performed exome-sequencing of surgical samples and target-sequencing of formalin-fixed, paraffin-embedded tissues.

  Study EGAS00001004746

• AML clonal phylogeny

  Study of AMl clonal phylogeny. Fastq files from targeted resequencing and from exome sequencing from AML patients at diagnosis, complete remission or relapse time.

  Study EGAS00001001779

• Whole genome bisulfite sequencing on 10 multiple myeloma cases

  Data quality control and adaptor-trimmed were performed with the Trimomatic tool. Paired-reads were mapped to the hg19 human reference with methylCtools aligner.

  Study EGAS00001004346

• Brain tumor sequencing data

  This study contains tumor DNA (with matched normal) for 1 medulloblastoma and 1 ependymoma patient. Tumor RNA sequencing data is also present for the medulloblastoma patient

  Study EGAS00001006352

• Homologous recombination deficiency derived from whole-genome sequencing predicts platinum response in triple-negative breast cancers

  To identify predictive biomarkers of response and resistance to platinum agents in PDX models of triple-negative breast cancer

  Study EGAS00001006393

• Data containing genome-wide SNP data from Northwestern Amazonia

  Provide new insights about the population history of NWA and identify the impact of intense population contact on patterns of genetic variation

  Study EGAS00001006767

• Analysis of enhancer-promoter connectivity alterations

  The study uncovers epigenomic changes associated with dexamethasone response heterogeneity in myeloma cells, revealing rewired promoter-enhancer interactions and DNA loop stabilization

  Study EGAS00001007411

• Comparative transcriptome of CD34+ hematopoietic progenitors from myeloproliferative patients and control donors

  Comparative transcriptome of CD34+ hematopoietic progenitors from 4 myeloproliferative patients (MPN) and 4 control donors performed by RNA-Sequencing.

  Dataset EGAD00001007531

• LBC1936 VCF

  LBC1921 and LBC1936 GVCFs called with GATK's HaplotypeCaller were combined and subject to variant quality score recalibration. This VCF contains the subset of samples (n = 1068) from the LBC1936 cohort.

  Dataset EGAD00001005478