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• Perturb-seq on CRC

  Systematic, genome-wide Investigation of enhancer regions in colorectal cancer. We used scRNA-seq with CRISPRi/dCas9 inhibition of 12,117 regions.

  Study EGAS50000000256

• Massive genomic rearrangement acquired in a single catastrophic event during cancer development

  Massive genomic rearrangement acquired in a single catastrophic event during cancer development

  Dataset EGAD00001000002

• WGS of PDO in depleted media

  Whole genome sequencing profiling of 7 PDAC patient-derived organoids (PDO) grown in a culture medium lacking both WNT3A and RSPO1- WGS unmapped reads, sequenced using NovaSeq 6000, 15x coverage 160 million reads per sample.

  Dataset EGAD50000000282

• Colorectal_organoids_and_tumoroids___pulldown

  Targeted capture of cancer gene panel bait set in single cell derived organoids from colon tissue and colorectal cancer from 1 patient.

  Study EGAS00001000869

• Whole genome and RNAseq analysis of pediatric osteosarcoma

  Integrative analysis whole genome sequencing and RNA-seq in pediatric osteosarcoma primary tumors and patient derived tumor xenografts.

  Study EGAS00001003201

• Familial Myeloid Leukemia

  Exomes from 48 individuals affected by some form of familial myeloid leukemia (MDS, AML, BMF TCP) with variants in 60 candidate genes

  Study EGAS00001003399

• Mutational signatures in esophageal squamous cell carcinoma from eight countries of varying incidence – filtered vcf files

  Mutational signatures in esophageal squamous cell carcinoma from eight countries of varying incidence – filtered vcf files

  Dataset EGAD00001008339

• Targeted sequencing of AVNRT patients

  Targeted sequencing of 284 patients with AV nodel reentry tachycardia (AVNRT). Sixty-seven genes, plausibly involved in AVNRT pathophysiology, were targeted. Using haloplex target enrichment system. Raw paired end fastq files are provided in this dataset.

  Dataset EGAD00001003903

• ATAC-seq dataset

  This dataset contains ATAC-seq data performed in MM.1S cell line in ETOH (control) or Dexamethasone condition (Treatment)

  Dataset EGAD00001011135

• mtDNA in Huntington’s disease samples

  This dataset contains sequencing data from a large-scale study of mtDNA variations measured, using a sensitive mtDNA-targeted sequencing method called STAMP, in lymphoblast and blood samples of Huntington’s Disease patients.

  Dataset EGAD00001005723