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• Exonic Counts

  Read counts, per gene, aligning to exons. Alignment performed with GSNAP. 20 samples.

  Dataset EGAD50000000820

• DNA methylation-based classification of sinonasal tumors [Proteomics data]

  This dataset includes raw label-free mass spectrometry proteomics data of different sinonasal tumor entities as well as normal sinonasal tissue. 72 samples were processed on a Q Exactive HF-X instrument coupled to an easy nanoLC 1200 system using one microgram of peptides and an 110 minutes gradient.

  Dataset EGAD00010002381

• Pre-neoadjuvant treatment biopsy RNAseq breast cancer dataset

  This dataset contains RNAseq data of n=87 pre-treatment biopsies of triple negative and luminal- type breast cancer patients, all scheduled to receive neoadjuvant chemotherapy. Gene expression data is linked with treatment response and survival.

  Dataset EGAD00001008433

• HDBR exome sequencing data (November 2022)

  Exome sequencing data from seven phenotypically abnormal human fetal samples. Anaysis perfomed using Illumina NovaSeq 6000, Twist Bioscience - Human Comprehensive Exome. Paired end fastq files were aligned to hg38 reference genome using BWA-MEM v0.7.15, followed by sorting using SAMtools sort v1.3.1, and duplicate reads marked using Picard Tools MarkDuplicates v2.18.2

  Dataset EGAD00001009715

• HDBR exome sequencing data (May 2022)

  Exome sequencing data from seven phenotypically abnormal human fetal samples. Anaysis perfomed using Illumina NovaSeq 6000, Twist Bioscience - Human Comprehensive Exome. Paired end fastq files were aligned to hg38 reference genome using BWA-MEM v0.7.15, followed by sorting using SAMtools sort v1.3.1, and duplicate reads marked using Picard Tools MarkDuplicates v2.18.2

  Dataset EGAD00001008825

• Foundation Medicine Binary Calls

  Binary calls for all available samples in 4 Atezo trials.

  Dataset EGAD50000000709

• Targeted nanopore sequencing of MARCHF6 repeat expansions

  This dataset includes FASTQ files from MARCHF6 alleles sequenced by targeted nanopore in 8 patients.

  Dataset EGAD50000000812

• Single cell RNAseq of PBMC in chimeric twins

  scRNAseq data generated with 10x genomics

  Dataset EGAD50000000132

• Knoll et al Identification of drug candidates targeting monocyte reprogramming in people living with HIV

  Bulk RNAseq PBMC

  Dataset EGAD50000000068

• WP8_DNA_Methylation_450K_UCL

  BLUEPRINT DNA methylation profiles of monocytes, T cells and B cells in type 1 diabetes-discordant monozygotic twins

  Dataset EGAD00010001025