Gastric_and_Esophageal_tumour_rearrangement_screen - EGA European Genome-Phenome Archive

Study

Gastric and Esophageal tumour rearrangement screen

Study ID	Alternative Stable ID	Type
EGAS00001000037		Cancer Genomics

Study Description

Genomic libraries (500 bps) will be generated from total genomic DNA derived from gastric and esophageal tumours and subjected to total of two lanes of 50 bp, paired end sequencing on the llumina HiSeq. Paired reads will be mapped to build 37 of the human reference genome to facilitate the generation of genome wide copy number information, and the identification of novel rearranged cancer genes and gene fusions.

Study Datasets 2 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001000075	Gastric and Esophageal tumour rearrangement screen Gastric and Esophageal tumour rearrangement screen	Illumina HiSeq 2000	32
EGAD00001000638	Insertion of processed pseudogenes is known to occur in the germline but has not previously been observed in somatic cells. Formation of pseudogenes could represent a new class of mutation in cancers and a new source of potential driver events. Insertion of processed pseudogenes is known to occur in the germline but has not previously been observed in somatic cells. Formation of pseudogenes could represent a new class of mutation in cancers and a new source of potential driver events.	Illumina HiSeq 2000	20

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