Study
SHH medulloblastoma samples
| Study ID | Alternative Stable ID | Type |
|---|---|---|
| EGAS00001000607 | Other |
Study Description
Sequencing data of human SHH medulloblastoma samples
Study Datasets 5 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00001000697 |
Illumina HiSeq sequence data (with >30x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed.
|
Illumina Genome Analyzer IIx,Illumina HiSeq 2000 | 90 |
| EGAD00001000698 |
Illumina HiSeq sequence data (with >80x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed.The whole exome sequencing data of 20 SHH medulloblastomas from phs000504.v1.p1 dataset has been used in our study on SHH medulloblastomas: http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000504.v1.p1
|
4 | |
| EGAD00001000699 |
Illumina HiSeq sequence data (with >80x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed.
|
Illumina HiSeq 2000 | 78 |
| EGAD00001001624 |
release_2: ICGC PedBrain: whole exome sequencing and Target-Seq
|
Illumina HiSeq 2000 | 188 |
| EGAD00001001625 |
release_2: ICGC PedBrain: whole genome sequencing
|
Illumina Genome Analyzer IIx,Illumina HiSeq 2000 | 209 |
Who archives the data?
Publications
Citations
Retrieving...
Retrieving...
