Study

SHH medulloblastoma samples

Study ID Alternative Stable ID Type
EGAS00001000607 Other

Study Description

Sequencing data of human SHH medulloblastoma samples

Study Datasets 5 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001000697
Illumina HiSeq sequence data (with >30x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed.
Illumina Genome Analyzer IIx,Illumina HiSeq 2000 90
EGAD00001000698
Illumina HiSeq sequence data (with >80x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed.The whole exome sequencing data of 20 SHH medulloblastomas from phs000504.v1.p1 dataset has been used in our study on SHH medulloblastomas: http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000504.v1.p1
4
EGAD00001000699
Illumina HiSeq sequence data (with >80x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed.
Illumina HiSeq 2000 78
EGAD00001001624
release_2: ICGC PedBrain: whole exome sequencing and Target-Seq
Illumina HiSeq 2000 188
EGAD00001001625
release_2: ICGC PedBrain: whole genome sequencing
Illumina Genome Analyzer IIx,Illumina HiSeq 2000 209

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