Browse files

Dataset

Whole Exome DNA Sequencing of matched brain tumor-normal pairs

Dataset ID	Technology	Samples
EGAD00001000698	N/A	4

Dataset Description

Illumina HiSeq sequence data (with >80x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed.The whole exome sequencing data of 20 SHH medulloblastomas from phs000504.v1.p1 dataset has been used in our study on SHH medulloblastomas: http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000504.v1.p1

Data Use Conditions

NPU HMB PS

See further information on Data Use Conditions

Label	Code	Version
general research use	DUO:0000042	2019-01-07
not for profit, non commercial use only	DUO:0000018	2019-01-07
health or medical or biomedical research	DUO:0000006	2019-01-07
project specific restriction	DUO:0000027	2019-01-07

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

ICGC Data Access Compliance Office
Contact person: helpdesk
Email: daco [at] icgc-argo [dot] org
Access information: https://docs.icgc-argo.org/docs/data-access/daco/applying
More details: EGAC00001000010

Downloads

You don't have access to the download section.

This dataset is featured in 1 study

Studies are experimental investigations of a particular phenomenon. e.g. case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients. Click on one of the Study IDs below to find out more.

Study ID	Study Title	Study Type
EGAS00001000607	SHH medulloblastoma samples	Other

EGA Beacon