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ICGC Oesophageal adenocarcinoma - 100 tumour samples

The oesophageal project will focus on adenocarcinoma which is increasing in incidence in the UK and other developed countries and has a very poor outcome. The primary aims of this project are to deeply sequence tumour and normal genomic DNA (including the precursor condition Barrett’s oesophagus when material is available) to provide a comprehensive catalogue of somatic mutations. This will be achieved through a UK-wide network of hospitals involved in a research collaboration called the OCCAMS consortium. The goal of this project is to use high quality clinical material with accurately annotated clinic-pathological, treatment and outcome data.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001001048 Illumina HiSeq 2000 -
EGAD00001001071 Illumina HiSeq 2000 10
EGAD00001001394 Illumina HiSeq 2000 -
EGAD00001001457 Illumina HiSeq 2000 24
EGAD00001001960 Illumina HiSeq 2000 -
EGAD00001002218 Illumina HiSeq 2000 10
EGAD00001002241 Illumina HiSeq 2000 6
EGAD00001002689 Illumina HiSeq 2000 -
EGAD00001003292 Illumina HiSeq 2000 34
EGAD00001003580 Illumina HiSeq 2000 38
EGAD00001004137 Illumina HiSeq 2000 -
EGAD00001004417 Illumina HiSeq 2000 -
EGAD00001004775 Illumina HiSeq 2000 -
EGAD00001005434 Illumina HiSeq 2000 -
EGAD00001007493 HiSeq X Five Illumina HiSeq 2000 Illumina NovaSeq 6000 8
EGAD00001007496 HiSeq X Five Illumina HiSeq 2000 -
EGAD00001007785 HiSeq X Five Illumina HiSeq 2000 Illumina NovaSeq 6000 -
EGAD00001007808 Illumina HiSeq 2000 -
EGAD00001011095 HiSeq X Five Illumina HiSeq 2000 -
EGAD00001011187 HiSeq X Five Illumina HiSeq 2000 Illumina NovaSeq 6000 unspecified 63
EGAD00001011191 HiSeq X Five Illumina HiSeq 2000 Illumina NovaSeq 6000 unspecified 42
EGAD00001011196 HiSeq X Five Illumina HiSeq 2000 Illumina NovaSeq 6000 unspecified 6