Reproducibility of variant calls in replicate next generation sequencing experiments
|Study ID||Alternative Stable ID||Type|
Study Datasets 1 dataset.
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To examined the reproducibility of nucleotide variant calls in replicate sequencing experiments of the same genomic DNA, we performed targeted sequencing of all known human protein kinase genes (kinome) (~3.3 Mb) using the SOLiD v4 platform. This data set contains 17 breast cancer samples that were sequenced in duplicate (n=14) or triplicate (n=3), in order to assess concordance of all calls and single nucleotide variant (SNV) calls.
|AB SOLiD 4 System||37|