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Reproducibility of variant calls in replicate next generation sequencing experiments

To examined the reproducibility of nucleotide variant calls in replicate sequencing experiments of the same genomic DNA, we performed targeted sequencing of all known human protein kinase genes (kinome) (~3.3 Mb) using the SOLiD v4 platform. This data set contains 17 breast cancer samples that were sequenced in duplicate (n=14) or triplicate (n=3), in order to assess concordance of all calls and single nucleotide variant (SNV) calls.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000826 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000697936 csfasta.gz 821.2 MB
EGAF00000697937 qual.gz 1.7 GB
EGAF00000697938 csfasta.gz 622.3 MB
EGAF00000697939 qual.gz 1.3 GB
EGAF00000697940 csfasta.gz 568.8 MB
EGAF00000697941 qual.gz 1.2 GB
EGAF00000697942 csfasta.gz 431.4 MB
EGAF00000697943 qual.gz 884.2 MB
EGAF00000697944 csfasta.gz 725.3 MB
EGAF00000697945 qual.gz 1.5 GB
EGAF00000697946 csfasta.gz 549.9 MB
EGAF00000697947 qual.gz 1.1 GB
EGAF00000697948 csfasta.gz 709.2 MB
EGAF00000697949 qual.gz 1.5 GB
EGAF00000697950 csfasta.gz 546.0 MB
EGAF00000697951 qual.gz 1.1 GB
EGAF00000697952 csfasta.gz 708.0 MB
EGAF00000697953 qual.gz 1.5 GB
EGAF00000697954 csfasta.gz 551.1 MB
EGAF00000697955 qual.gz 1.1 GB
EGAF00000697956 csfasta.gz 1.1 GB
EGAF00000697957 qual.gz 2.3 GB
EGAF00000697958 csfasta.gz 836.8 MB
EGAF00000697959 qual.gz 1.7 GB
EGAF00000697960 csfasta.gz 861.8 MB
EGAF00000697961 qual.gz 1.8 GB
EGAF00000697962 csfasta.gz 650.0 MB
EGAF00000697963 qual.gz 1.4 GB
EGAF00000697964 csfasta.gz 706.2 MB
EGAF00000697965 qual.gz 1.5 GB
EGAF00000697966 csfasta.gz 548.1 MB
EGAF00000697967 qual.gz 1.1 GB
EGAF00000697968 csfasta.gz 939.1 MB
EGAF00000697969 qual.gz 2.0 GB
EGAF00000697970 csfasta.gz 725.5 MB
EGAF00000697971 qual.gz 1.5 GB
EGAF00000697972 csfasta.gz 1.1 GB
EGAF00000697973 qual.gz 2.3 GB
EGAF00000697974 csfasta.gz 867.2 MB
EGAF00000697975 qual.gz 1.8 GB
EGAF00000697976 csfasta.gz 847.7 MB
EGAF00000697977 qual.gz 1.8 GB
EGAF00000697978 csfasta.gz 655.4 MB
EGAF00000697979 qual.gz 1.3 GB
EGAF00000697980 csfasta.gz 748.0 MB
EGAF00000697981 qual.gz 1.6 GB
EGAF00000697982 csfasta.gz 576.3 MB
EGAF00000697983 qual.gz 1.2 GB
EGAF00000697984 csfasta.gz 819.2 MB
EGAF00000697985 qual.gz 1.7 GB
EGAF00000697986 csfasta.gz 620.3 MB
EGAF00000697987 qual.gz 1.3 GB
EGAF00000697988 csfasta.gz 887.4 MB
EGAF00000697989 qual.gz 1.8 GB
EGAF00000697990 csfasta.gz 671.1 MB
EGAF00000697991 qual.gz 1.4 GB
EGAF00000697992 csfasta.gz 862.3 MB
EGAF00000697993 qual.gz 1.8 GB
EGAF00000697994 csfasta.gz 652.9 MB
EGAF00000697995 qual.gz 1.4 GB
EGAF00000697996 csfasta.gz 774.1 MB
EGAF00000697997 qual.gz 1.6 GB
EGAF00000697998 csfasta.gz 596.4 MB
EGAF00000697999 qual.gz 1.2 GB
EGAF00000698000 csfasta.gz 879.1 MB
EGAF00000698001 qual.gz 1.8 GB
EGAF00000698002 csfasta.gz 670.5 MB
EGAF00000698003 qual.gz 1.4 GB
EGAF00000698004 csfasta.gz 1.0 GB
EGAF00000698005 qual.gz 2.1 GB
EGAF00000698006 csfasta.gz 804.0 MB
EGAF00000698007 qual.gz 1.6 GB
EGAF00000698008 csfasta.gz 590.3 MB
EGAF00000698009 qual.gz 1.2 GB
EGAF00000698010 csfasta.gz 442.6 MB
EGAF00000698011 qual.gz 948.6 MB
EGAF00000698012 csfasta.gz 909.9 MB
EGAF00000698013 qual.gz 1.9 GB
EGAF00000698014 csfasta.gz 685.1 MB
EGAF00000698015 qual.gz 1.5 GB
EGAF00000698016 csfasta.gz 765.7 MB
EGAF00000698017 qual.gz 1.6 GB
EGAF00000698018 csfasta.gz 576.5 MB
EGAF00000698019 qual.gz 1.2 GB
EGAF00000698020 csfasta.gz 772.3 MB
EGAF00000698021 qual.gz 1.6 GB
EGAF00000698022 csfasta.gz 599.0 MB
EGAF00000698023 qual.gz 1.2 GB
EGAF00000698024 csfasta.gz 1.1 GB
EGAF00000698025 qual.gz 2.2 GB
EGAF00000698026 csfasta.gz 825.3 MB
EGAF00000698027 qual.gz 1.7 GB
EGAF00000698028 csfasta.gz 470.8 MB
EGAF00000698029 qual.gz 969.0 MB
EGAF00000698030 csfasta.gz 365.6 MB
EGAF00000698031 qual.gz 740.7 MB
EGAF00000698032 csfasta.gz 748.1 MB
EGAF00000698033 qual.gz 1.5 GB
EGAF00000698034 csfasta.gz 566.2 MB
EGAF00000698035 qual.gz 1.2 GB
EGAF00000698036 csfasta.gz 738.6 MB
EGAF00000698037 qual.gz 1.5 GB
EGAF00000698038 csfasta.gz 568.9 MB
EGAF00000698039 qual.gz 1.2 GB
EGAF00000698040 csfasta.gz 1.1 GB
EGAF00000698041 qual.gz 2.3 GB
EGAF00000698042 csfasta.gz 869.9 MB
EGAF00000698043 qual.gz 1.8 GB
EGAF00000698044 csfasta.gz 784.6 MB
EGAF00000698045 qual.gz 1.6 GB
EGAF00000698046 csfasta.gz 610.3 MB
EGAF00000698047 qual.gz 1.2 GB
EGAF00000698048 csfasta.gz 725.2 MB
EGAF00000698049 qual.gz 1.5 GB
EGAF00000698050 csfasta.gz 548.3 MB
EGAF00000698051 qual.gz 1.2 GB
EGAF00000698052 csfasta.gz 906.4 MB
EGAF00000698053 qual.gz 1.9 GB
EGAF00000698054 csfasta.gz 683.8 MB
EGAF00000698055 qual.gz 1.5 GB
EGAF00000698056 csfasta.gz 1.1 GB
EGAF00000698057 qual.gz 2.3 GB
EGAF00000698058 csfasta.gz 807.9 MB
EGAF00000698059 qual.gz 1.7 GB
EGAF00000698060 csfasta.gz 738.3 MB
EGAF00000698061 qual.gz 1.5 GB
EGAF00000698062 csfasta.gz 556.0 MB
EGAF00000698063 qual.gz 1.2 GB
EGAF00000698064 csfasta.gz 649.3 MB
EGAF00000698065 qual.gz 1.4 GB
EGAF00000698066 csfasta.gz 488.5 MB
EGAF00000698067 qual.gz 1.0 GB
EGAF00000698068 csfasta.gz 675.3 MB
EGAF00000698069 qual.gz 1.4 GB
EGAF00000698070 csfasta.gz 524.0 MB
EGAF00000698071 qual.gz 1.1 GB
EGAF00000698072 csfasta.gz 698.6 MB
EGAF00000698073 qual.gz 1.4 GB
EGAF00000698074 csfasta.gz 541.3 MB
EGAF00000698075 qual.gz 1.1 GB
EGAF00000698076 csfasta.gz 832.5 MB
EGAF00000698077 qual.gz 1.7 GB
EGAF00000698078 csfasta.gz 643.3 MB
EGAF00000698079 qual.gz 1.3 GB
EGAF00000698080 csfasta.gz 777.9 MB
EGAF00000698081 qual.gz 1.7 GB
EGAF00000698082 csfasta.gz 599.2 MB
EGAF00000698083 qual.gz 1.2 GB
148 Files (163.6 GB)