Study of renal cancers and renal cancer metastases - EGA European Genome-Phenome Archive

Study ID	Alternative Stable ID	Type
EGAS00001001176		Other

Study ID

Alternative Stable ID

Type

EGAS00001001176

Other

Study Datasets 6 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00010001001	Primary renal cell carcinoma (RCC), RCC metastases and cell lines by Illumina 450K Primary renal cell carcinoma (RCC), RCC metastases and cell lines by Illumina 450K	Illumina 450K	1
EGAD00010001564	Primary renal cell carcinoma (RCC) by Affymetrix GeneChip miRNA 4.0 Primary renal cell carcinoma (RCC) by Affymetrix GeneChip miRNA 4.0	Affymetrix GeneChip miRNA 4.0	N/A
EGAD00010001589	Primary renal cell carcinoma (RCC) and RCC metastases by Affymetrix GeneChip HTA 2.0 Primary renal cell carcinoma (RCC) and RCC metastases by Affymetrix GeneChip HTA 2.0	Affymetrix Human Transcriptome Array 2.0	112
EGAD00010002323	GeneChipâ„¢ HTA 2.0 data of primary renal cell carcinoma (RCC) related to Reustle et al, Genome Med 12:2020 32. Preprocessing of microarray data was performed using Robust Multi-array Average (RMA). GeneChipâ„¢ HTA 2.0 data of primary renal cell carcinoma (RCC) related to Reustle et al, Genome Med 12:2020 32. Preprocessing of microarray data was performed using Robust Multi-array Average (RMA).	GeneChipâ„¢ Human Transcriptome Array 2.0	53
EGAD00010002352	GeneChip HTA 2.0 data of primary renal cell carcinoma (RCC) related to Reustle et al.,Clin Transl Med 2022 Jun;12(6):e883. Microarrays were normalized individually using the SCAN method from the R package SCAN.UPC (version 2.26.0, R version 3.6.1). Probe sets were summarized on the Entrez GeneID level using the annotation provided by BrainArray (version 23). GeneChip HTA 2.0 data of primary renal cell carcinoma (RCC) related to Reustle et al.,Clin Transl Med 2022 Jun;12(6):e883. Microarrays were normalized individually using the SCAN method from the R package SCAN.UPC (version 2.26.0, R version 3.6.1). Probe sets were summarized on the Entrez GeneID level using the annotation provided by BrainArray (version 23).	GeneChipâ„¢ Human Transcriptome Array 2.0	124
EGAD00010002353	GeneChip HTA 2.0 data of primary renal cell carcinoma (RCC) related to Buettner et al, Genome Med 2022. Microarrays were normalized individually using the SCAN method from the R package SCAN.UPC (version 2.26.0, R version 3.6.1). Probe sets were summarized on the Entrez GeneID level using the annotation provided by BrainArray (version 23). GeneChip HTA 2.0 data of primary renal cell carcinoma (RCC) related to Buettner et al, Genome Med 2022. Microarrays were normalized individually using the SCAN method from the R package SCAN.UPC (version 2.26.0, R version 3.6.1). Probe sets were summarized on the Entrez GeneID level using the annotation provided by BrainArray (version 23).	GeneChipâ„¢ Human Transcriptome Array 2.0	306

Dataset ID

Description

Technology

Samples

EGAD00010001001

Primary renal cell carcinoma (RCC), RCC metastases and cell lines by Illumina 450K

Illumina 450K

EGAD00010001564

Primary renal cell carcinoma (RCC) by Affymetrix GeneChip miRNA 4.0

Affymetrix GeneChip miRNA 4.0

N/A

EGAD00010001589

Primary renal cell carcinoma (RCC) and RCC metastases by Affymetrix GeneChip HTA 2.0

Affymetrix Human Transcriptome Array 2.0

112

EGAD00010002323

GeneChipâ„¢ HTA 2.0 data of primary renal cell carcinoma (RCC) related to Reustle et al, Genome Med 12:2020 32. Preprocessing of microarray data was performed using Robust Multi-array Average (RMA).

GeneChipâ„¢ Human Transcriptome Array 2.0

EGAD00010002352

GeneChip HTA 2.0 data of primary renal cell carcinoma (RCC) related to Reustle et al.,Clin Transl Med 2022 Jun;12(6):e883. Microarrays were normalized individually using the SCAN method from the R package SCAN.UPC (version 2.26.0, R version 3.6.1). Probe sets were summarized on the Entrez GeneID level using the annotation provided by BrainArray (version 23).

GeneChipâ„¢ Human Transcriptome Array 2.0

124

EGAD00010002353

GeneChip HTA 2.0 data of primary renal cell carcinoma (RCC) related to Buettner et al, Genome Med 2022. Microarrays were normalized individually using the SCAN method from the R package SCAN.UPC (version 2.26.0, R version 3.6.1). Probe sets were summarized on the Entrez GeneID level using the annotation provided by BrainArray (version 23).

GeneChipâ„¢ Human Transcriptome Array 2.0

306

Study

Study Description

Study Datasets 6 datasets.

Who archives the data?

Publications

Citations

The European Genome-phenome Archive (EGA) is part of the ELIXIR infrastructure.