Study

Korea Epigenome Project(KEP), Korea National Research Institute of Health(KNIH)

Study ID Alternative Stable ID Type
EGAS00001001774 Other

Study Description

The KEP was launched in 2012 to produce 50 epigenomic sets on Korean chronic diseases related target cells with the participation on Internationsl Human Epigenome Consortium(IHEC) of which focus is constructing 1000 reference epigenome map on 250 human cell type. The objective of the KEP was to provide a comprehensive epigenomic map of Korean chronic disease-related target tissues. Single cells were isolated from the pancreas, fat and kidney. Islet, ductal, acinar, and beta cells from the pancreas were purified into a single homogenous cell type using flow-assisted cell sorting technique. Adipocytes and pre-adipocytes were purified from fat, using Percoll gradient centrifugation technique. Mesangial, distal tubule, proximal tubule, podocytes, and collecting duct cells from the kidney were collected using mechanical sieving and immunostaining methods. Each cell type was derived from normal tissue or those with diabetes, obesity, or chronic kidney disease. Sixty reference epigenome datasets of pancreatic, fat, kidney cells were produced. Cell types such as the islets, and beta from ... (Show More)

Study Datasets 111 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001002167
A KNIH001 mRNA-seq paired end data for islet cells
Illumina HiSeq 2000 1
EGAD00001002168
A KNIH002 mRNA-seq paired end data for islet cells
Illumina HiSeq 2000 1
EGAD00001002169
A KNIH003 mRNA-seq paired end data for islet cells
Illumina HiSeq 2000 1
EGAD00001002170
A KNIH004 mRNA-seq paired end data for islet cells
Illumina HiSeq 2000 1
EGAD00001002171
A KNIH005 mRNA-seq paired end data for islet cells
Illumina HiSeq 2000 1
EGAD00001002172
A KNIH006 mRNA-seq paired end data for beta cells
Illumina HiSeq 2000 1
EGAD00001002173
A KNIH007 mRNA-seq paired end data for adipocytes
Illumina HiSeq 2000 1
EGAD00001002174
A KNIH008 mRNA-seq paired end data for adipocytes
Illumina HiSeq 2000 1
EGAD00001002175
A KNIH009 mRNA-seq paired end data for preadipocytes
Illumina HiSeq 2000 1
EGAD00001002176
A KNIH010 mRNA-seq paired end data for podocytes
Illumina HiSeq 2000 1
EGAD00001002177
A KNIH011 mRNA-seq paired end data for podocytes
Illumina HiSeq 2000 1
EGAD00001002749
A KNIH001 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for islet cells
Illumina HiSeq 2000 1
EGAD00001002750
A KNIH002 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for islet cells
Illumina HiSeq 2000 1
EGAD00001002751
A KNIH003 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for islet cells
Illumina HiSeq 2000 1
EGAD00001002752
A KNIH004 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for islet cells
Illumina HiSeq 2000 1
EGAD00001002753
A KNIH005 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for islet cells
Illumina HiSeq 2000 1
EGAD00001002754
A KNIH006 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for beta cells
Illumina HiSeq 2000 1
EGAD00001002755
A KNIH007 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for adipocytes
Illumina HiSeq 2000 1
EGAD00001002756
A KNIH008 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for adipocytes
Illumina HiSeq 2000 1
EGAD00001002757
A KNIH009 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for preadipocytes
Illumina HiSeq 2000 1
EGAD00001002758
A KNIH010 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for podocytes
Illumina HiSeq 2000 1
EGAD00001002759
A KNIH011 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for podocytes
Illumina HiSeq 2000 1
EGAD00001002760
A KNIH001 miRNA-seq single end data for islet cells
Illumina HiSeq 2500 1
EGAD00001002761
A KNIH002 miRNA-seq single end data for islet cells
Illumina HiSeq 2500 1
EGAD00001002762
A KNIH003 miRNA-seq single end data for islet cells
Illumina HiSeq 2500 1
EGAD00001002763
A KNIH004 miRNA-seq single end data for islet cells
Illumina HiSeq 2500 1
EGAD00001002764
A KNIH005 miRNA-seq single end data for islet cells
Illumina HiSeq 2500 1
EGAD00001002765
A KNIH006 miRNA-seq single end data for beta cells
Illumina HiSeq 2500 1
EGAD00001002766
A KNIH007 miRNA-seq single end data for adipocytes
Illumina HiSeq 2500 1
EGAD00001002767
A KNIH008 miRNA-seq single end data for adipocytes
Illumina HiSeq 2500 1
EGAD00001002768
A KNIH009 miRNA-seq single end data for preadipocytes
Illumina HiSeq 2500 1
EGAD00001002769
A KNIH010 miRNA-seq single end data for podocytes
Illumina HiSeq 2500 1
EGAD00001002770
A KNIH011 miRNA-seq single end data for podocytes
Illumina HiSeq 2500 1
EGAD00001003468
A CKD23_C_Mesan_WGBS paired end data for Mesangial cells(kidney)
HiSeq X Ten 1
EGAD00001003469
A CKD24_C_Podo_WGBS paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)
HiSeq X Ten 1
EGAD00001003470
A CKD25_C_Podo_WGBS paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)
HiSeq X Ten 1
EGAD00001003471
A CKD27_C_Mesan_WGBS paired end data for Mesangial cells(kidney)
HiSeq X Ten 1
EGAD00001003472
A DB31_N_Alpha_WGBS paired end data for alpha cells(PSA-NCAM(-), pancreas)
HiSeq X Ten 1
EGAD00001003473
A IPS01_N_Fibroblast_WGBS paired end data for iPSC(Oct4)
HiSeq X Ten 1
EGAD00001003474
A IPS02_N_NPC_WGBS paired end data for Neural progenitor cells(Nestin)
HiSeq X Ten 1
EGAD00001003475
A IPS03_N_ENeuron_WGBS paired end data for Early neuron cells(Tuj1)
HiSeq X Ten 1
EGAD00001003476
A IPS04_X_Fibroblast_WGBS paired end data for iPSC(Oct4)
HiSeq X Ten 1
EGAD00001003477
A IPS05_X_NPC_WGBS paired end data for Neural progenitor cells(Nestin)
HiSeq X Ten 1
EGAD00001003478
A IPS06_X_ENeuron_WGBS paired end data for Early neuron cells(Tuj1)
HiSeq X Ten 1
EGAD00001003479
A OB56_N_PreA_WGBS paired end data for Preadipocytes(fat)
HiSeq X Ten 1
EGAD00001003480
A OB57_D_PreA_WGBS paired end data for Preadipocyte(fat)
HiSeq X Ten 1
EGAD00001003481
A CKD23_C_Mesan_mRNA-Seq paired end data for Mesangial cells(kidney)
Illumina HiSeq 2500 1
EGAD00001003482
A CKD24_C_Podo_mRNA-Seq paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)
Illumina HiSeq 2500 1
EGAD00001003483
A CKD25_C_Podo_mRNA-Seq paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)
Illumina HiSeq 2500 1
EGAD00001003484
A CKD27_C_Mesan_mRNA-Seq paired end data for Mesangial cells(kidney)
Illumina HiSeq 2500 1
EGAD00001003485
A DB31_N_Alpha_mRNA-Seq paired end data for alpha cells(PSA-NCAM(-), pancreas)
Illumina HiSeq 2500 1
EGAD00001003486
A OB56_N_PreA_mRNA-Seq paired end data for Preadipocytes(fat)
Illumina HiSeq 2500 1
EGAD00001003487
A OB57_D_PreA_mRNA-Seq paired end data for Preadipocyte(fat)
Illumina HiSeq 2500 1
EGAD00001003488
A IPS01_N_Fibroblast_mRNA-Seq paired end data for iPSC(Oct4)
Illumina HiSeq 2500 1
EGAD00001003489
A IPS02_N_NPC_mRNA-Seq paired end data for Neural progenitor cells(Nestin)
Illumina HiSeq 2500 1
EGAD00001003490
A IPS03_N_ENeuron_mRNA-Seq paired end data for Early neuron cells(Tuj1)
Illumina HiSeq 2500 1
EGAD00001003491
A IPS04_X_Fibroblast_mRNA-Seq paired end data for iPSC(Oct4)
Illumina HiSeq 2500 1
EGAD00001003492
A IPS05_X_NPC_mRNA-Seq paired end data for Neural progenitor cells(Nestin)
Illumina HiSeq 2500 1
EGAD00001003493
A IPS06_X_ENeuron_mRNA-Seq paired end data for Early neuron cells(Tuj1)
Illumina HiSeq 2500 1
EGAD00001003494
A DB31_N_Alpha_smRNA-Seq single end data for alpha cells(PSA-NCAM(-), pancreas)
Illumina HiSeq 2500 1
EGAD00001003495
A OB56_N_PreA_smRNA-Seq single end data for Preadipocytes(fat)
Illumina HiSeq 2500 1
EGAD00001003496
A OB57_D_PreA_smRNA-Seq single end data for Preadipocyte(fat)
Illumina HiSeq 2500 1
EGAD00001003497
A CKD23_C_Mesan_smRNA-Seq single end data for Mesangial cells(kidney)
Illumina HiSeq 2500 1
EGAD00001003498
A CKD24_C_Podo_smRNA-Seq single end data for Podocytes(CD90(-) Podocalyxin(+), kidney)
Illumina HiSeq 2500 1
EGAD00001003499
A CKD25_C_Podo_smRNA-Seq single end data for Podocytes(CD90(-) Podocalyxin(+), kidney)
Illumina HiSeq 2500 1
EGAD00001003500
A CKD27_C_Mesan_smRNA-Seq single end data for Mesangial cells(kidney)
Illumina HiSeq 2500 1
EGAD00001003501
A IPS01_N_Fibroblast_smRNA-Seq single end data for iPSC(Oct4)
Illumina HiSeq 2500 1
EGAD00001003502
A IPS02_N_NPC_smRNA-Seq single end data for Neural progenitor cells(Nestin)
Illumina HiSeq 2500 1
EGAD00001003503
A IPS03_N_ENeuron_smRNA-Seq single end data for Early neuron cells(Tuj1)
Illumina HiSeq 2500 1
EGAD00001003504
A IPS04_X_Fibroblast_smRNA-Seq single end data for iPSC(Oct4)
Illumina HiSeq 2500 1
EGAD00001003505
A IPS05_X_NPC_smRNA-Seq single end data for Neural progenitor cells(Nestin)
Illumina HiSeq 2500 1
EGAD00001003506
A IPS06_X_ENeuron_smRNA-Seq single end data for Early neuron cells(Tuj1)
Illumina HiSeq 2500 1
EGAD00001003845
A SMC01_ChIP-Seq(H3K27me3) paired end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003846
A SMC02_ChIP-Seq(H3K27me3) paired end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003847
A SMC03_ChIP-Seq(H3K27me3) paired end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003848
A SMC04_ChIP-Seq(H3K27me3) paired end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003849
A SMC05_ChIP-Seq(H3K27me3) paired end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003850
A SMC06_ChIP-Seq(H3K27me3) paired end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003851
A SMC07_ChIP-Seq(H3K27me3) paired end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003852
A SMC08_ChIP-Seq(H3K27me3) paired end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003853
A SMC09_ChIP-Seq(H3K27me3) paired end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003854
A ADMSC01_ChIP-Seq(H3K27me3) paired end data for adipose-derived mesenchymal stroaml cells
Illumina HiSeq 2500 1
EGAD00001003855
A ADMSC02_ChIP-Seq(H3K27me3) paired end data for adipose-derived mesenchymal stroaml cells
Illumina HiSeq 2500 1
EGAD00001003856
A ADMSC03_ChIP-Seq(H3K27me3) paired end data for adipose-derived mesenchymal stroaml cells
Illumina HiSeq 2500 1
EGAD00001003857
A ADMSC04_ChIP-Seq(H3K27me3) paired end data for adipose-derived mesenchymal stroaml cells
Illumina HiSeq 2500 1
EGAD00001003858
A SMC01_smRNA-Seq single end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003859
A SMC02_smRNA-Seq single end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003860
A SMC03_smRNA-Seq single end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003861
A SMC04_smRNA-Seq single end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003862
A SMC05_smRNA-Seq single end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003863
A SMC06_smRNA-Seq single end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003864
A SMC07_smRNA-Seq single end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003865
A SMC08_smRNA-Seq single end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003866
A SMC09_smRNA-Seq single end data for skeletal muscle cells
Illumina HiSeq 2500 1
EGAD00001003867
A ADMSC01_smRNA-Seq single end data for adipose-derived mesenchymal stroaml cells
Illumina HiSeq 2500 1
EGAD00001003868
A ADMSC02_smRNA-Seq single end data for adipose-derived mesenchymal stroaml cells
Illumina HiSeq 2500 1
EGAD00001003869
A ADMSC03_smRNA-Seq single end data for adipose-derived mesenchymal stroaml cells
Illumina HiSeq 2500 1
EGAD00001003870
A ADMSC04_smRNA-Seq single end data for adipose-derived mesenchymal stroaml cells
Illumina HiSeq 2500 1
EGAD00001003871
A SMC01_WGBS paired end data for skeletal muscle cells
HiSeq X Ten 1
EGAD00001003872
A SMC02_WGBS paired end data for skeletal muscle cells
HiSeq X Ten 1
EGAD00001003873
A SMC05_WGBS paired end data for skeletal muscle cells
HiSeq X Ten 1
EGAD00001003874
A SMC06_WGBS paired end data for skeletal muscle cells
HiSeq X Ten 1
EGAD00001003875
A SMC07_WGBS paired end data for skeletal muscle cells
HiSeq X Ten 1
EGAD00001003876
A SMC08_WGBS paired end data for skeletal muscle cells
HiSeq X Ten 1
EGAD00001003877
A SMC09_WGBS paired end data for skeletal muscle cells
HiSeq X Ten 1
EGAD00001003878
A ADMSC01_WGBS paired end data for adipose-derived mesenchymal stroaml cells
HiSeq X Ten 1
EGAD00001003879
A ADMSC02_WGBS paired end data for adipose-derived mesenchymal stroaml cells
HiSeq X Ten 1
EGAD00001003880
A ADMSC03_WGBS paired end data for adipose-derived mesenchymal stroaml cells
HiSeq X Ten 1
EGAD00001003881
A ADMSC04_WGBS paired end data for adipose-derived mesenchymal stroaml cells
HiSeq X Ten 1
EGAD00001003888
A SMC03_WGBS paired end data for skeletal muscle cells
HiSeq X Ten 1
EGAD00001003889
A SMC04_WGBS paired end data for skeletal muscle cells
HiSeq X Ten 1

Who archives the data?

Publications

Citations

Retrieving...
Retrieving...