Study

Kidney Single Cell Study

Study ID Alternative Stable ID Type
EGAS00001002325 Transcriptome Analysis

Study Description

We intend to use single cell transcriptome analysis to explore the heterogenity of different cell types within the kidney.

Study Datasets 4 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001004304
We intend to use single cell transcriptome analysis to explore the heterogenity of different cell types within the kidney. . This dataset contains all the data available for this study on 2018-08-20.
Illumina HiSeq 2500 1290
EGAD00001007854
We have performed single cell RNA-sequencing for infant and childhood B-cell acute lymphoblastic leukemias as well as infant acute myeloid leukemias at diagnosis. The sequencing was performed with 10X Chromium single cell 3’ and 5’ chemistry.
Illumina HiSeq 4000,Illumina NovaSeq 6000 8
EGAD00001008345
Using the chromium 3' expression assay, we generated an atlas of neuroblastoma and the human fetal adrenal gland. These data were complemented with whole genome sequencing of normal and tumour DNA from the neuroblastoma samples.
Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina MiSeq,Illumina NovaSeq 6000 32
EGAD00001009005
Single cell transcriptomes, generated using chromium 10X 3' sequencing, for two tumour types (AT/RT, and Ewing's sarcoma). For each individual, tumour and normal whole genome sequencing was also obtained using Illumina short read sequencing to an average depth of 30X. These data were used to validate the accuracy of a method for identifying cancer cell transcriptomes based on the allelic shift produced by copy number changes.
HiSeq X Ten,Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NovaSeq 6000 15

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