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Detection of cancer cell transcriptomes

Single cell transcriptomes, generated using chromium 10X 3' sequencing, for two tumour types (AT/RT, and Ewing's sarcoma). For each individual, tumour and normal whole genome sequencing was also obtained using Illumina short read sequencing to an average depth of 30X. These data were used to validate the accuracy of a method for identifying cancer cell transcriptomes based on the allelic shift produced by copy number changes.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002171 Other
EGAS00001002325 Transcriptome Analysis
EGAS00001002486 Cancer Genomics
EGAS00001002964 Cancer Genomics
EGAS00001003445 Transcriptome Analysis
ID File Type Size Located in
EGAF00004694957 cram 441.5 MB
EGAF00004855875 cram 7.6 GB
EGAF00004855878 cram 7.8 GB
EGAF00004855881 cram 7.4 GB
EGAF00004855884 cram 7.6 GB
EGAF00004855887 cram 7.5 GB
EGAF00005207128 cram 1.4 GB
EGAF00005207129 cram 1.8 GB
EGAF00005207130 cram 2.0 GB
EGAF00005207131 cram 1.7 GB
EGAF00005207132 cram 1.8 GB
EGAF00005207133 cram 1.8 GB
EGAF00005207134 cram 1.5 GB
EGAF00005207135 cram 2.0 GB
EGAF00005207136 cram 2.1 GB
EGAF00005207137 cram 633.4 MB
EGAF00005207138 cram 1.8 GB
EGAF00005207139 cram 2.0 GB
EGAF00005207140 cram 1.3 GB
EGAF00005207141 cram 1.6 GB
EGAF00005207142 cram 1.8 GB
EGAF00005207143 cram 1.5 GB
EGAF00005207144 cram 1.7 GB
EGAF00005207145 cram 1.6 GB
EGAF00005207146 cram 1.4 GB
EGAF00005207147 cram 1.8 GB
EGAF00005207148 cram 1.9 GB
EGAF00005207149 cram 351.2 MB
EGAF00005207150 cram 1.6 GB
EGAF00005207151 cram 1.8 GB
EGAF00005207172 cram 2.4 GB
EGAF00005207173 cram 1.7 GB
EGAF00005207174 cram 3.4 GB
EGAF00005207175 cram 2.1 GB
EGAF00005207176 cram 2.4 GB
EGAF00005207177 cram 2.5 GB
EGAF00005207178 cram 2.5 GB
EGAF00005207179 cram 2.7 GB
EGAF00005207260 cram 4.9 GB
EGAF00005207261 cram 4.6 GB
EGAF00005207262 cram 4.1 GB
EGAF00005207263 cram 4.9 GB
EGAF00005207264 cram 5.2 GB
EGAF00005207265 cram 3.9 GB
EGAF00005207266 cram 3.9 GB
EGAF00005207267 cram 5.5 GB
EGAF00005207268 cram 5.7 GB
EGAF00005207269 cram 6.4 GB
EGAF00005207270 cram 4.0 GB
EGAF00005207271 cram 5.8 GB
EGAF00005489102 cram 15.9 GB
EGAF00005489103 cram 23.6 GB
EGAF00005489104 cram 14.1 GB
EGAF00005489105 cram 16.7 GB
EGAF00005489111 cram 16.0 GB
EGAF00005489112 cram 23.7 GB
EGAF00005489113 cram 14.1 GB
EGAF00005489114 cram 16.7 GB
EGAF00006270023 cram 315.0 MB
EGAF00006270024 cram 369.0 MB
EGAF00006270025 cram 431.5 MB
EGAF00006270026 cram 424.4 MB
EGAF00006270027 cram 311.3 MB
EGAF00006270028 cram 364.5 MB
EGAF00006270029 cram 426.7 MB
EGAF00006270030 cram 419.9 MB
EGAF00006270031 cram 312.1 MB
EGAF00006270032 cram 365.3 MB
EGAF00006270033 cram 427.7 MB
EGAF00006270034 cram 420.1 MB
EGAF00006270035 cram 310.9 MB
EGAF00006270036 cram 363.9 MB
EGAF00006270037 cram 426.4 MB
EGAF00006270038 cram 418.7 MB
EGAF00006270039 cram 309.0 MB
EGAF00006270040 cram 361.9 MB
EGAF00006270041 cram 424.1 MB
EGAF00006270042 cram 416.3 MB
EGAF00006270043 cram 310.9 MB
EGAF00006270044 cram 363.7 MB
EGAF00006270045 cram 426.7 MB
EGAF00006270046 cram 418.5 MB
EGAF00006270047 cram 307.4 MB
EGAF00006270048 cram 359.9 MB
EGAF00006270049 cram 421.6 MB
EGAF00006270050 cram 414.7 MB
EGAF00006270051 cram 308.5 MB
EGAF00006270052 cram 360.8 MB
EGAF00006270053 cram 422.9 MB
EGAF00006270054 cram 415.3 MB
90 Files (308.5 GB)