Microbial signatures and innate immune gene expression in lamina propria phagocytes of inflammatory bowel diseases patients

Study

Study ID	Alternative Stable ID	Type
EGAS00001003105		Other

Study Description

The microbial populations associated with the lamina propria phagocyte population in CD and UC patients was examined. Specifically, the differences between phagocyte-associated microbiota (PAM) and mucosa-associated microbiota were determined.

Study Datasets 1 dataset.

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Dataset ID	Description	Technology	Samples
EGAD00001005482	Bacterial 16S V4 rDNA was amplified using two differently barcoded V4 fusion primers. Pooled PCR samples were purified and paired-end sequenced on MiSeq instrument for 250 cycles. The steps from DNA quantification to sequencing were conducted at Second Genome Inc. Bacterial 16S V4 rDNA was amplified using two differently barcoded V4 fusion primers. Pooled PCR samples were purified and paired-end sequenced on MiSeq instrument for 250 cycles. The steps from DNA quantification to sequencing were conducted at Second Genome Inc.	Illumina MiSeq	109

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