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16S data from IBD patients

Bacterial 16S V4 rDNA was amplified using two differently barcoded V4 fusion primers. Pooled PCR samples were purified and paired-end sequenced on MiSeq instrument for 250 cycles. The steps from DNA quantification to sequencing were conducted at Second Genome Inc.

Request Access

If you want access to the data of this project, please contact Judith Pignac-Kobinger(jpignac@med.miami.edu)

Application for Access to 16S Sequencing Data Applications for access to data can be submitted at any time. The UMiami Gastro team Data Access Committee will consider applications on a rolling basis and aim to provide a decision within 2 months of receipt. Name of applicant co-applicant(s) and Principle investigator including affiliations and contact details. Title of Project Sequencing Data Requested Please provide a clear description of the project and its specific aims in no more than 750 words. This should include specific details of what you plan to do with the data. (Use separate page) I have read, completed and returned the UMiami Gastro data access agreement Signed: Name: Date:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003105 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002044551 fastq.gz 75.5 MB
EGAF00002044552 fastq.gz 83.2 MB
EGAF00002044553 fastq.gz 45.7 MB
EGAF00002044554 fastq.gz 50.8 MB
EGAF00002044555 fastq.gz 69.7 MB
EGAF00002044556 fastq.gz 76.4 MB
EGAF00002044557 fastq.gz 45.8 MB
EGAF00002044558 fastq.gz 50.4 MB
EGAF00002044559 fastq.gz 55.5 MB
EGAF00002044560 fastq.gz 49.8 MB
EGAF00002044561 fastq.gz 73.5 MB
EGAF00002044562 fastq.gz 66.6 MB
EGAF00002044563 fastq.gz 84.7 MB
EGAF00002044564 fastq.gz 77.3 MB
EGAF00002044565 fastq.gz 91.1 MB
EGAF00002044566 fastq.gz 85.4 MB
EGAF00002044567 fastq.gz 59.5 MB
EGAF00002044568 fastq.gz 66.9 MB
EGAF00002044569 fastq.gz 74.9 MB
EGAF00002044570 fastq.gz 83.0 MB
EGAF00002044571 fastq.gz 34.8 MB
EGAF00002044572 fastq.gz 39.1 MB
EGAF00002044573 fastq.gz 26.0 MB
EGAF00002044574 fastq.gz 29.9 MB
EGAF00002044575 fastq.gz 44.1 MB
EGAF00002044576 fastq.gz 49.9 MB
EGAF00002044577 fastq.gz 47.0 MB
EGAF00002044578 fastq.gz 41.3 MB
EGAF00002044579 fastq.gz 18.9 MB
EGAF00002044580 fastq.gz 16.8 MB
EGAF00002044581 fastq.gz 64.7 MB
EGAF00002044582 fastq.gz 58.5 MB
EGAF00002044583 fastq.gz 39.0 MB
EGAF00002044584 fastq.gz 44.3 MB
EGAF00002044585 fastq.gz 41.6 MB
EGAF00002044586 fastq.gz 36.5 MB
EGAF00002044587 fastq.gz 58.8 MB
EGAF00002044588 fastq.gz 65.3 MB
EGAF00002044589 fastq.gz 45.0 MB
EGAF00002044590 fastq.gz 39.1 MB
EGAF00002044591 fastq.gz 50.6 MB
EGAF00002044592 fastq.gz 43.5 MB
EGAF00002044593 fastq.gz 35.9 MB
EGAF00002044594 fastq.gz 31.1 MB
EGAF00002044595 fastq.gz 43.9 MB
EGAF00002044596 fastq.gz 49.9 MB
EGAF00002044597 fastq.gz 46.6 MB
EGAF00002044598 fastq.gz 52.0 MB
EGAF00002044599 fastq.gz 38.9 MB
EGAF00002044600 fastq.gz 44.1 MB
EGAF00002044601 fastq.gz 48.7 MB
EGAF00002044602 fastq.gz 44.7 MB
EGAF00002044603 fastq.gz 62.7 MB
EGAF00002044604 fastq.gz 56.3 MB
EGAF00002044605 fastq.gz 51.2 MB
EGAF00002044606 fastq.gz 48.8 MB
EGAF00002044607 fastq.gz 73.0 MB
EGAF00002044608 fastq.gz 66.4 MB
EGAF00002044609 fastq.gz 57.4 MB
EGAF00002044610 fastq.gz 51.6 MB
EGAF00002044611 fastq.gz 53.2 MB
EGAF00002044612 fastq.gz 59.2 MB
EGAF00002044613 fastq.gz 37.3 MB
EGAF00002044614 fastq.gz 42.2 MB
EGAF00002044615 fastq.gz 61.9 MB
EGAF00002044616 fastq.gz 54.6 MB
EGAF00002044617 fastq.gz 27.6 MB
EGAF00002044618 fastq.gz 24.5 MB
EGAF00002044619 fastq.gz 62.5 MB
EGAF00002044620 fastq.gz 56.4 MB
EGAF00002044621 fastq.gz 45.2 MB
EGAF00002044622 fastq.gz 51.1 MB
EGAF00002044623 fastq.gz 40.7 MB
EGAF00002044624 fastq.gz 36.3 MB
EGAF00002044625 fastq.gz 43.0 MB
EGAF00002044626 fastq.gz 36.4 MB
EGAF00002044627 fastq.gz 17.2 MB
EGAF00002044628 fastq.gz 15.0 MB
EGAF00002044629 fastq.gz 46.4 MB
EGAF00002044630 fastq.gz 52.7 MB
EGAF00002044631 fastq.gz 46.8 MB
EGAF00002044632 fastq.gz 40.8 MB
EGAF00002044633 fastq.gz 48.4 MB
EGAF00002044634 fastq.gz 42.5 MB
EGAF00002044635 fastq.gz 34.3 MB
EGAF00002044636 fastq.gz 39.1 MB
EGAF00002044637 fastq.gz 42.5 MB
EGAF00002044638 fastq.gz 48.5 MB
EGAF00002044639 fastq.gz 54.8 MB
EGAF00002044640 fastq.gz 49.3 MB
EGAF00002044641 fastq.gz 50.9 MB
EGAF00002044642 fastq.gz 45.1 MB
EGAF00002044643 fastq.gz 64.8 MB
EGAF00002044644 fastq.gz 57.6 MB
EGAF00002044645 fastq.gz 68.4 MB
EGAF00002044646 fastq.gz 75.8 MB
EGAF00002044647 fastq.gz 48.7 MB
EGAF00002044648 fastq.gz 44.4 MB
EGAF00002044649 fastq.gz 72.4 MB
EGAF00002044650 fastq.gz 64.9 MB
EGAF00002044651 fastq.gz 71.0 MB
EGAF00002044652 fastq.gz 78.7 MB
EGAF00002044653 fastq.gz 55.2 MB
EGAF00002044654 fastq.gz 56.9 MB
EGAF00002044655 fastq.gz 52.9 MB
EGAF00002044656 fastq.gz 47.4 MB
EGAF00002044657 fastq.gz 62.0 MB
EGAF00002044658 fastq.gz 56.1 MB
EGAF00002044659 fastq.gz 63.8 MB
EGAF00002044660 fastq.gz 57.5 MB
EGAF00002044661 fastq.gz 63.9 MB
EGAF00002044662 fastq.gz 56.9 MB
EGAF00002044663 fastq.gz 39.0 MB
EGAF00002044664 fastq.gz 33.7 MB
EGAF00002044665 fastq.gz 23.9 MB
EGAF00002044666 fastq.gz 27.7 MB
EGAF00002044667 fastq.gz 30.8 MB
EGAF00002044668 fastq.gz 26.5 MB
EGAF00002044669 fastq.gz 21.9 MB
EGAF00002044670 fastq.gz 25.2 MB
EGAF00002044671 fastq.gz 60.6 MB
EGAF00002044672 fastq.gz 67.5 MB
EGAF00002044673 fastq.gz 55.6 MB
EGAF00002044674 fastq.gz 61.6 MB
EGAF00002044675 fastq.gz 22.5 MB
EGAF00002044676 fastq.gz 20.0 MB
EGAF00002044677 fastq.gz 48.8 MB
EGAF00002044678 fastq.gz 55.4 MB
EGAF00002044679 fastq.gz 45.0 MB
EGAF00002044680 fastq.gz 52.4 MB
EGAF00002044681 fastq.gz 44.2 MB
EGAF00002044682 fastq.gz 49.4 MB
EGAF00002044683 fastq.gz 28.0 MB
EGAF00002044684 fastq.gz 32.2 MB
EGAF00002044685 fastq.gz 57.7 MB
EGAF00002044686 fastq.gz 51.6 MB
EGAF00002044687 fastq.gz 9.5 MB
EGAF00002044688 fastq.gz 10.9 MB
EGAF00002044689 fastq.gz 33.4 MB
EGAF00002044690 fastq.gz 37.7 MB
EGAF00002044691 fastq.gz 35.0 MB
EGAF00002044692 fastq.gz 31.1 MB
EGAF00002044693 fastq.gz 76.7 MB
EGAF00002044694 fastq.gz 84.5 MB
EGAF00002044695 fastq.gz 52.1 MB
EGAF00002044696 fastq.gz 58.8 MB
EGAF00002044697 fastq.gz 31.1 MB
EGAF00002044698 fastq.gz 34.9 MB
EGAF00002044699 fastq.gz 51.6 MB
EGAF00002044700 fastq.gz 56.8 MB
EGAF00002044701 fastq.gz 58.3 MB
EGAF00002044702 fastq.gz 49.9 MB
EGAF00002044703 fastq.gz 40.7 MB
EGAF00002044704 fastq.gz 45.6 MB
EGAF00002044705 fastq.gz 30.0 MB
EGAF00002044706 fastq.gz 33.6 MB
EGAF00002044707 fastq.gz 46.2 MB
EGAF00002044708 fastq.gz 52.9 MB
EGAF00002044709 fastq.gz 23.3 MB
EGAF00002044710 fastq.gz 26.2 MB
EGAF00002044711 fastq.gz 44.5 MB
EGAF00002044712 fastq.gz 49.6 MB
EGAF00002044713 fastq.gz 50.4 MB
EGAF00002044714 fastq.gz 45.2 MB
EGAF00002044715 fastq.gz 12.3 MB
EGAF00002044716 fastq.gz 13.9 MB
EGAF00002044717 fastq.gz 72.7 MB
EGAF00002044718 fastq.gz 65.9 MB
EGAF00002044719 fastq.gz 64.3 MB
EGAF00002044720 fastq.gz 71.6 MB
EGAF00002044721 fastq.gz 50.7 MB
EGAF00002044722 fastq.gz 57.1 MB
EGAF00002044723 fastq.gz 29.3 MB
EGAF00002044724 fastq.gz 32.8 MB
EGAF00002044725 fastq.gz 51.9 MB
EGAF00002044726 fastq.gz 46.7 MB
EGAF00002044727 fastq.gz 27.7 MB
EGAF00002044728 fastq.gz 24.7 MB
EGAF00002044729 fastq.gz 23.7 MB
EGAF00002044730 fastq.gz 20.7 MB
EGAF00002044731 fastq.gz 24.6 MB
EGAF00002044732 fastq.gz 21.4 MB
EGAF00002044733 fastq.gz 11.1 MB
EGAF00002044734 fastq.gz 13.0 MB
EGAF00002044735 fastq.gz 42.9 MB
EGAF00002044736 fastq.gz 47.6 MB
EGAF00002044737 fastq.gz 53.9 MB
EGAF00002044738 fastq.gz 47.7 MB
EGAF00002044739 fastq.gz 36.1 MB
EGAF00002044740 fastq.gz 39.9 MB
EGAF00002044741 fastq.gz 31.2 MB
EGAF00002044742 fastq.gz 36.3 MB
EGAF00002044743 fastq.gz 42.9 MB
EGAF00002044744 fastq.gz 38.1 MB
EGAF00002044745 fastq.gz 34.2 MB
EGAF00002044746 fastq.gz 30.3 MB
EGAF00002044747 fastq.gz 12.7 MB
EGAF00002044748 fastq.gz 11.3 MB
EGAF00002044749 fastq.gz 42.6 MB
EGAF00002044750 fastq.gz 47.8 MB
EGAF00002044751 fastq.gz 49.9 MB
EGAF00002044752 fastq.gz 44.5 MB
EGAF00002044753 fastq.gz 47.4 MB
EGAF00002044754 fastq.gz 52.7 MB
EGAF00002044755 fastq.gz 41.4 MB
EGAF00002044756 fastq.gz 46.9 MB
EGAF00002044757 fastq.gz 13.3 MB
EGAF00002044758 fastq.gz 11.6 MB
EGAF00002044759 fastq.gz 78.7 MB
EGAF00002044760 fastq.gz 72.8 MB
EGAF00002044761 fastq.gz 60.7 MB
EGAF00002044762 fastq.gz 55.1 MB
EGAF00002044763 fastq.gz 69.0 MB
EGAF00002044764 fastq.gz 62.0 MB
EGAF00002044765 fastq.gz 27.4 MB
EGAF00002044766 fastq.gz 24.4 MB
EGAF00002044767 fastq.gz 72.6 MB
EGAF00002044768 fastq.gz 66.7 MB
EGAF00002053509 fastq.gz 110.0 MB
EGAF00002053510 fastq.gz 101.7 MB
220 Files (10.5 GB)