Hepatocellular carcinoma xenografts established from needle biopsies preserve the characteristics of the originating tumors

Study ID Alternative Stable ID Type
EGAS00001003396 Transcriptome Analysis

Study Description

Study Datasets 2 datasets.

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Dataset ID Description Technology Samples
RNA-sequencing of human hepatocellular carcinoma biopsies (n=14), 44 HCC xenografts derived from 11 HCC biopsies and 3 lymphoma xenografts derived from 3 HCC biopsies. RNA-sequencing was performed using the TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold (lllumina). SR126 sequencing was performed on an Illumina HiSeq 2500 using v4 SBS chemistry according to the manufacturer’s guidelines.
Illumina HiSeq 2500 61
RNA-seq of Bone Metastasis from breast and prostate cancer (4 breast and 5 prostate samples). Dataset contains BAM files from RNA-seq performed using Illumina HiSeq 2500.
Illumina HiSeq 2500,Illumina NovaSeq 6000,Ion Torrent S5 XL 288

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