Phased whole genome sequencing of 10 melanoma samples

Study ID Alternative Stable ID Type
EGAS00001004136 Other

Study Description

We have sequenced 10 melanoma samples using 10X linked reads technology to obtain phased whole genome sequence data. Using this data, we created diploid personalized genomes for each sample and aligned functional genomics data obtained from the same samples in order to find allele specific events (such as allele-specific binding and allele-specific chromatin accessibility).

Study Datasets 1 dataset.

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Dataset ID Description Technology Samples
We have sequenced whole genomes of 10 melanoma samples (1 cell line; A375 and 9 patient derived short term cultures). Libraries were prepared with 10X linked reads technology in order to obtain phase information and subsequently sequenced on Illumina NovaSeq6000.
Illumina NovaSeq 6000 10

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